Wall clock time and date at job start Mon Mar 30 2020 02:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 114.00094 * 2 1 4 4 C 1.50696 * 109.47330 * 180.02562 * 3 2 1 5 5 N 1.30798 * 125.15788 * 89.97233 * 4 3 2 6 6 C 1.33324 * 109.25623 * 180.02562 * 5 4 3 7 7 C 1.39418 * 107.08239 * 359.97438 * 6 5 4 8 8 C 1.39852 * 126.87446 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99860 * 359.97438 * 8 7 6 10 10 C 1.40159 * 120.00105 * 179.97438 * 8 7 6 11 11 N 1.30797 * 120.00183 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00189 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47016 * 89.99722 * 12 10 8 14 14 H 1.48491 * 109.47413 * 210.00504 * 12 10 8 15 15 H 1.48497 * 109.46750 * 330.00609 * 12 10 8 16 16 O 1.34014 * 125.15034 * 270.00006 * 4 3 2 17 17 H 1.08996 * 109.47264 * 300.00458 * 1 2 3 18 18 H 1.09005 * 109.46545 * 60.00452 * 1 2 3 19 19 H 1.08995 * 109.47186 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.47344 * 59.99476 * 3 2 1 21 21 H 1.09004 * 109.46943 * 300.00004 * 3 2 1 22 22 H 1.08003 * 126.45846 * 179.97438 * 6 5 4 23 23 H 0.97005 * 120.00343 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.2629 1.1267 -1.0703 6 6 5.5413 1.0250 -0.7056 7 6 5.5706 1.0234 0.6883 8 6 6.7032 0.9341 1.5038 9 1 7.6841 0.8557 1.0588 10 6 6.5653 0.9462 2.8985 11 7 5.3772 1.0406 3.4375 12 14 8.0782 0.8276 3.9878 13 1 8.5895 2.1919 4.2751 14 1 7.7193 0.1549 5.2620 15 1 9.1287 0.0419 3.2920 16 8 4.2822 1.1254 1.0948 17 1 -0.3633 0.5139 0.8899 18 1 -0.3632 0.5138 -0.8901 19 1 -0.3633 -1.0276 0.0005 20 1 1.6887 1.8464 0.8899 21 1 1.6887 1.8463 -0.8900 22 1 6.3935 0.9568 -1.3655 23 1 5.2817 1.0487 4.4028 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261188611.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:42 Heat of formation + Delta-G solvation = -68.784333 kcal Electronic energy + Delta-G solvation = -10744.000589 eV Core-core repulsion = 8557.539911 eV Total energy + Delta-G solvation = -2186.460678 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.99724 -38.71687 -35.87945 -34.73952 -31.98764 -29.63873 -27.09345 -25.60597 -22.61722 -21.91967 -19.53100 -17.68363 -17.52795 -17.01280 -16.49046 -16.22312 -15.61237 -15.08915 -14.06102 -13.65772 -13.17355 -13.05022 -13.03210 -12.78292 -12.32097 -12.03909 -11.67797 -11.40030 -10.97322 -10.68061 -9.58624 -8.90081 -6.67585 0.98141 1.37406 1.54694 1.57626 2.06572 2.13332 2.62280 3.04939 3.29304 3.82871 4.20909 4.39543 4.56326 4.59979 4.83454 4.85980 4.94623 5.08992 5.52419 5.99133 6.15327 6.24778 6.40833 6.51033 7.56148 8.12061 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.065532 B = 0.011159 C = 0.009826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.168750 B = 2508.608010 C = 2849.007061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.425 6.425 3 C 0.194 3.806 4 C -0.006 4.006 5 N -0.452 5.452 6 C -0.257 4.257 7 C 0.147 3.853 8 C -0.454 4.454 9 H 0.126 0.874 10 C 0.017 3.983 11 N -0.806 5.806 12 Si 1.016 2.984 13 H -0.254 1.254 14 H -0.265 1.265 15 H -0.246 1.246 16 O -0.209 6.209 17 H 0.054 0.946 18 H 0.060 0.940 19 H 0.098 0.902 20 H 0.074 0.926 21 H 0.094 0.906 22 H 0.169 0.831 23 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.214 0.414 1.732 3.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C 0.117 3.883 4 C -0.206 4.206 5 N -0.182 5.182 6 C -0.402 4.402 7 C 0.092 3.908 8 C -0.482 4.482 9 H 0.144 0.856 10 C -0.202 4.202 11 N -0.432 5.432 12 Si 0.833 3.167 13 H -0.178 1.178 14 H -0.189 1.189 15 H -0.169 1.169 16 O -0.098 6.098 17 H 0.073 0.927 18 H 0.078 0.922 19 H 0.117 0.883 20 H 0.092 0.908 21 H 0.112 0.888 22 H 0.186 0.814 23 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.634 0.284 1.337 3.883 hybrid contribution 0.526 0.093 0.920 1.064 sum -3.108 0.377 2.257 3.860 Atomic orbital electron populations 1.22997 0.78495 1.04122 1.01426 1.87973 1.22371 1.28436 1.95647 1.20122 0.80929 0.84950 1.02283 1.25382 0.95879 1.19466 0.79843 1.69281 1.03832 1.13528 1.31571 1.23181 0.93965 1.30304 0.92766 1.21247 0.82679 0.93365 0.93523 1.19372 0.92387 1.44985 0.91448 0.85595 1.27430 1.01879 0.90714 1.00132 1.69854 1.26788 1.31465 1.15059 0.84695 0.75581 0.80162 0.76260 1.17814 1.18876 1.16927 1.84679 1.17201 1.72952 1.34977 0.92710 0.92152 0.88319 0.90758 0.88844 0.81397 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 14 2 O -0.42 -17.52 10.69 -148.98 -1.59 -19.11 14 3 C 0.19 8.12 6.56 71.23 0.47 8.59 14 4 C -0.01 -0.35 7.92 88.26 0.70 0.35 14 5 N -0.45 -25.60 11.23 -300.14 -3.37 -28.97 14 6 C -0.26 -14.55 11.99 84.75 1.02 -13.54 14 7 C 0.15 8.72 6.83 22.95 0.16 8.88 14 8 C -0.45 -24.52 9.35 23.13 0.22 -24.30 14 9 H 0.13 6.11 7.85 -2.91 -0.02 6.08 14 10 C 0.02 0.85 5.50 85.31 0.47 1.32 14 11 N -0.81 -43.07 12.06 21.87 0.26 -42.81 14 12 Si 1.02 35.94 29.56 68.60 2.03 37.97 14 13 H -0.25 -8.51 7.11 99.48 0.71 -7.80 14 14 H -0.26 -8.90 7.11 99.48 0.71 -8.19 14 15 H -0.25 -8.22 7.11 99.48 0.71 -7.51 14 16 O -0.21 -12.73 9.17 -11.82 -0.11 -12.84 14 17 H 0.05 1.27 8.14 -2.39 -0.02 1.26 14 18 H 0.06 1.34 8.14 -2.38 -0.02 1.32 14 19 H 0.10 2.25 8.14 -2.39 -0.02 2.23 14 20 H 0.07 2.81 8.14 -2.39 -0.02 2.80 14 21 H 0.09 3.36 8.14 -2.39 -0.02 3.34 14 22 H 0.17 8.51 8.06 -2.91 -0.02 8.48 14 23 H 0.30 14.06 8.30 -92.70 -0.77 13.29 14 Total: -1.00 -69.94 218.10 2.70 -67.24 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.21 Total: 15.29 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 4.27 Total: -16.78 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -3.11 Total: -71.78 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.70 Total: -31.95 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Total: -69.94 2.70 -67.24 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261188611.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.543 kcal (2) G-P(sol) polarization free energy of solvation -69.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds