Wall clock time and date at job start Mon Mar 30 2020 02:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35750 * 117.00412 * 2 1 4 4 N 1.30978 * 125.76876 * 0.02562 * 3 2 1 5 5 O 1.41508 * 108.75486 * 179.74541 * 4 3 2 6 6 C 1.35138 * 107.99858 * 0.42198 * 5 4 3 7 7 C 1.39995 * 126.37686 * 179.85320 * 6 5 4 8 8 H 1.08000 * 119.99655 * 185.85615 * 7 6 5 9 9 C 1.40392 * 119.99777 * 5.85599 * 7 6 5 10 10 N 1.30597 * 120.00086 * 6.45243 * 9 7 6 11 11 Si 1.86803 * 119.99783 * 186.45003 * 9 7 6 12 12 H 1.48501 * 109.46962 * 265.01475 * 11 9 7 13 13 H 1.48498 * 109.47164 * 25.01465 * 11 9 7 14 14 H 1.48499 * 109.47081 * 145.01308 * 11 9 7 15 15 C 1.39181 * 107.24799 * 359.58692 * 6 5 4 16 16 C 1.50708 * 126.22793 * 180.22832 * 15 6 5 17 17 H 1.08999 * 109.46850 * 299.99795 * 1 2 3 18 18 H 1.08996 * 109.47160 * 59.99408 * 1 2 3 19 19 H 1.08996 * 109.47004 * 180.02562 * 1 2 3 20 20 H 0.97000 * 119.99338 * 179.97438 * 10 9 7 21 21 H 1.08995 * 109.47266 * 90.00252 * 16 15 6 22 22 H 1.09004 * 109.47095 * 210.00148 * 16 15 6 23 23 H 1.08996 * 109.46964 * 330.00169 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2095 0.0000 4 7 1.4461 2.3742 0.0005 5 8 2.4294 3.3918 0.0062 6 6 3.6438 2.7990 -0.0002 7 6 4.8844 3.4477 -0.0005 8 1 5.7938 2.8738 -0.1015 9 6 4.9464 4.8441 0.1304 10 7 3.8602 5.5255 0.3784 11 14 6.5824 5.7275 -0.0501 12 1 7.1864 5.9296 1.2914 13 1 7.4970 4.9095 -0.8865 14 1 6.3644 7.0455 -0.6986 15 6 3.4316 1.4234 -0.0004 16 6 4.4974 0.3578 -0.0017 17 1 -0.3633 0.5138 0.8900 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3633 -1.0276 0.0005 20 1 3.9032 6.4903 0.4693 21 1 4.7552 0.1006 1.0256 22 1 4.1245 -0.5283 -0.5155 23 1 5.3830 0.7304 -0.5163 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261221048.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:15 Heat of formation + Delta-G solvation = -38.392090 kcal Electronic energy + Delta-G solvation = -10903.351687 eV Core-core repulsion = 8718.208915 eV Total energy + Delta-G solvation = -2185.142772 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.67419 -39.26205 -35.84944 -33.74613 -32.08395 -29.20614 -28.35731 -26.10484 -22.60258 -21.41071 -19.67210 -17.32420 -17.05289 -17.00283 -16.38347 -15.47077 -15.36367 -14.49049 -14.15460 -13.59360 -13.51259 -13.05294 -12.87031 -12.66711 -12.55035 -12.31049 -11.84902 -11.37681 -11.33825 -10.25078 -9.49524 -8.96204 -6.92443 0.93330 1.39626 1.55739 1.61150 1.98867 2.03883 2.13446 3.01900 3.10343 4.18069 4.29820 4.42473 4.53858 4.68450 4.89824 5.00987 5.09970 5.14691 5.49613 5.52714 5.89172 6.30239 6.34370 6.56936 7.20627 8.04161 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.077595 B = 0.012174 C = 0.010627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.760198 B = 2299.451175 C = 2634.076614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.290 3.710 4 N -0.510 5.510 5 O -0.104 6.104 6 C 0.210 3.790 7 C -0.432 4.432 8 H 0.130 0.870 9 C 0.021 3.979 10 N -0.787 5.787 11 Si 1.017 2.983 12 H -0.253 1.253 13 H -0.242 1.242 14 H -0.263 1.263 15 C -0.464 4.464 16 C -0.022 4.022 17 H 0.046 0.954 18 H 0.047 0.953 19 H 0.140 0.860 20 H 0.305 0.695 21 H 0.039 0.961 22 H 0.049 0.951 23 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 -3.002 -0.621 4.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.210 6.210 3 C 0.092 3.908 4 N -0.290 5.290 5 O -0.109 6.109 6 C 0.152 3.848 7 C -0.460 4.460 8 H 0.147 0.853 9 C -0.201 4.201 10 N -0.411 5.411 11 Si 0.833 3.167 12 H -0.177 1.177 13 H -0.165 1.165 14 H -0.187 1.187 15 C -0.475 4.475 16 C -0.079 4.079 17 H 0.065 0.935 18 H 0.066 0.934 19 H 0.158 0.842 20 H 0.116 0.884 21 H 0.057 0.943 22 H 0.068 0.932 23 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.961 -2.460 -0.579 3.199 hybrid contribution 0.382 0.148 0.029 0.411 sum 2.343 -2.312 -0.550 3.337 Atomic orbital electron populations 1.23180 0.76580 1.05310 1.01406 1.86118 1.23505 1.21992 1.89352 1.21236 0.92475 0.85613 0.91441 1.80073 1.08966 0.95112 1.44805 1.89264 1.13388 1.26716 1.81580 1.20467 0.87169 0.90077 0.87105 1.19684 0.91274 0.93154 1.41934 0.85263 1.27589 1.03964 0.98176 0.90412 1.69779 1.32765 1.11037 1.27548 0.84675 0.74279 0.77375 0.80364 1.17673 1.16507 1.18728 1.20372 0.91113 0.94402 1.41565 1.19462 0.94684 0.94173 0.99602 0.93514 0.93407 0.84193 0.88395 0.94267 0.93174 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 10.68 113.37 1.21 2.23 14 2 O -0.30 -13.56 10.56 -90.76 -0.96 -14.52 14 3 C 0.29 15.64 7.82 85.31 0.67 16.30 14 4 N -0.51 -29.82 12.30 -170.91 -2.10 -31.93 14 5 O -0.10 -6.53 10.55 26.25 0.28 -6.25 14 6 C 0.21 12.19 6.85 22.92 0.16 12.35 14 7 C -0.43 -22.32 9.08 23.22 0.21 -22.11 14 8 H 0.13 5.96 7.23 -2.91 -0.02 5.93 14 9 C 0.02 0.99 5.49 85.40 0.47 1.45 14 10 N -0.79 -41.00 12.08 21.90 0.26 -40.74 14 11 Si 1.02 34.02 29.57 68.60 2.03 36.05 14 12 H -0.25 -7.99 7.11 99.48 0.71 -7.29 14 13 H -0.24 -7.59 7.11 99.48 0.71 -6.88 14 14 H -0.26 -8.42 7.11 99.48 0.71 -7.71 14 15 C -0.46 -25.02 6.24 -19.14 -0.12 -25.14 14 16 C -0.02 -0.95 10.15 71.24 0.72 -0.22 14 17 H 0.05 1.62 8.14 -2.39 -0.02 1.60 14 18 H 0.05 1.65 8.14 -2.39 -0.02 1.63 14 19 H 0.14 3.28 8.14 -2.39 -0.02 3.26 14 20 H 0.30 13.85 8.29 -92.71 -0.77 13.09 14 21 H 0.04 1.59 8.14 -2.39 -0.02 1.57 14 22 H 0.05 1.99 8.14 -2.39 -0.02 1.97 14 23 H 0.06 2.25 7.47 -2.39 -0.02 2.24 14 Total: -1.00 -67.15 216.40 4.04 -63.11 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.22 Total: 9.41 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 3.32 Total: -15.13 kcal Atomic # 7 Polarization: -70.82 SS G_CDS: -1.84 Total: -72.66 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.68 Total: -20.77 kcal Atomic # 14 Polarization: 34.02 SS G_CDS: 2.03 Total: 36.05 kcal Total: -67.15 4.04 -63.11 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261221048.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.714 kcal (2) G-P(sol) polarization free energy of solvation -67.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds