Wall clock time and date at job start Mon Mar 30 2020 02:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.08993 * 110.11151 * 306.64225 * 10 9 7 12 12 C 1.51438 * 110.13273 * 185.00319 * 10 9 7 13 13 O 1.20754 * 127.64040 * 60.82341 * 12 10 9 14 14 C 1.51266 * 104.71435 * 240.85065 * 12 10 9 15 15 N 1.46189 * 107.49535 * 359.97438 * 14 12 10 16 16 C 1.33987 * 111.46077 * 359.97438 * 15 14 12 17 17 O 1.21276 * 124.87796 * 180.02562 * 16 15 14 18 18 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 20 20 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 21 21 H 1.09004 * 109.84926 * 119.48440 * 14 12 10 22 22 H 1.09001 * 109.84520 * 240.40531 * 14 12 10 23 23 H 0.97007 * 124.27051 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 1 2.9531 -3.5535 -0.8114 12 6 1.5076 -4.9792 -0.1076 13 8 0.7976 -5.3482 -1.0120 14 6 1.8564 -5.7298 1.1585 15 7 2.7450 -4.8759 1.9449 16 6 2.9809 -3.7115 1.3254 17 8 3.6843 -2.8246 1.7605 18 1 -0.4850 0.8400 0.0004 19 1 0.6245 -2.5529 0.8956 20 1 0.6244 -2.5609 -0.8844 21 1 0.9495 -5.9417 1.7249 22 1 2.3627 -6.6621 0.9084 23 1 3.1176 -5.1217 2.8062 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261252574.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:57 Heat of formation + Delta-G solvation = -100.738821 kcal Electronic energy + Delta-G solvation = -10908.161675 eV Core-core repulsion = 8720.315346 eV Total energy + Delta-G solvation = -2187.846329 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.81816 -39.55446 -36.69429 -35.55681 -33.00975 -28.94689 -27.83519 -24.50348 -21.72614 -21.02096 -18.78322 -18.23238 -17.22858 -16.56185 -16.22165 -16.14728 -15.51542 -15.17019 -14.61370 -14.34010 -13.87917 -13.33322 -13.07980 -12.70279 -12.53473 -11.94371 -11.51657 -11.02915 -10.59662 -10.31323 -10.14853 -8.22895 -6.31002 0.71679 1.37781 1.38874 1.53574 1.63393 2.36538 2.40774 2.88801 3.11012 3.44002 3.56735 4.32779 4.46545 4.53361 4.67616 5.27401 5.34608 5.71097 5.85077 6.03750 6.09896 6.29767 6.81452 7.31643 7.37719 8.89140 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.054673 B = 0.013222 C = 0.011347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.010510 B = 2117.129891 C = 2467.034565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.279 1.279 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.055 3.945 10 C -0.189 4.189 11 H 0.125 0.875 12 C 0.382 3.618 13 O -0.449 6.449 14 C 0.063 3.937 15 N -0.710 5.710 16 C 0.536 3.464 17 O -0.552 6.552 18 H 0.264 0.736 19 H 0.001 0.999 20 H 0.011 0.989 21 H 0.136 0.864 22 H 0.154 0.846 23 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.098 -12.038 3.364 13.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.204 1.204 7 C -0.564 4.564 8 H 0.079 0.921 9 C 0.018 3.982 10 C -0.211 4.211 11 H 0.143 0.857 12 C 0.257 3.743 13 O -0.322 6.322 14 C -0.061 4.061 15 N -0.370 5.370 16 C 0.322 3.678 17 O -0.429 6.429 18 H 0.073 0.927 19 H 0.019 0.981 20 H 0.029 0.971 21 H 0.154 0.846 22 H 0.171 0.829 23 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 3.900 -11.641 3.003 12.639 hybrid contribution 0.300 1.085 0.301 1.165 sum 4.201 -10.556 3.304 11.832 Atomic orbital electron populations 1.70074 1.07491 1.27775 1.52061 1.25865 0.95752 1.03113 0.94871 0.85429 0.78927 0.79034 0.77876 1.19324 1.19839 1.20430 1.21554 0.93590 0.91527 1.49746 0.92110 1.18650 0.92610 0.90795 0.96191 1.22436 1.01179 0.98430 0.99086 0.85715 1.24385 0.75876 0.87397 0.86625 1.90433 1.31005 1.73134 1.37595 1.22235 0.97705 0.95152 0.91057 1.45668 1.50513 1.16793 1.23991 1.19991 0.79726 0.81768 0.86321 1.90708 1.40443 1.40971 1.70773 0.92678 0.98107 0.97104 0.84641 0.82907 0.72816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.44 14 2 C 0.00 0.09 5.46 84.65 0.46 0.55 14 3 Si 0.96 46.76 29.54 68.60 2.03 48.79 14 4 H -0.27 -12.88 7.11 99.48 0.71 -12.18 14 5 H -0.27 -12.65 7.11 99.48 0.71 -11.94 14 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 14 7 C -0.53 -31.02 8.28 25.60 0.21 -30.81 14 8 H 0.06 3.62 7.04 -2.91 -0.02 3.60 14 9 C 0.06 2.92 4.46 29.85 0.13 3.05 14 10 C -0.19 -7.58 2.86 -12.03 -0.03 -7.62 14 11 H 0.13 4.94 8.14 -2.39 -0.02 4.93 14 12 C 0.38 11.98 7.46 29.52 0.22 12.20 14 13 O -0.45 -16.38 17.99 -1.43 -0.03 -16.41 14 14 C 0.06 1.18 7.69 85.87 0.66 1.84 14 15 N -0.71 -17.33 6.19 -467.57 -2.89 -20.22 14 16 C 0.54 20.52 7.69 87.80 0.68 21.19 14 17 O -0.55 -26.47 16.61 -3.02 -0.05 -26.52 14 18 H 0.26 15.31 8.31 -92.71 -0.77 14.54 14 19 H 0.00 0.03 8.13 -2.39 -0.02 0.01 14 20 H 0.01 0.61 8.14 -2.38 -0.02 0.59 14 21 H 0.14 1.92 8.14 -2.38 -0.02 1.90 14 22 H 0.15 1.58 8.14 -2.39 -0.02 1.56 14 23 H 0.43 7.81 8.96 -92.70 -0.83 6.98 14 Total: -1.00 -75.96 213.86 2.07 -73.88 By element: Atomic # 1 Polarization: -2.90 SS G_CDS: 0.40 Total: -2.50 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 2.33 Total: 0.41 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -2.61 Total: -77.66 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -0.08 Total: -42.92 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -75.96 2.07 -73.88 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261252574.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.856 kcal (2) G-P(sol) polarization free energy of solvation -75.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds