Wall clock time and date at job start Mon Mar 30 2020 02:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34410 * 126.46561 * 2 1 4 4 H 0.97000 * 124.10814 * 359.97438 * 3 2 1 5 5 O 1.20960 * 111.79507 * 179.97438 * 3 2 1 6 6 C 1.34198 * 110.90931 * 0.02562 * 5 3 2 7 7 O 1.22007 * 126.98766 * 180.02562 * 6 5 3 8 8 C 1.36074 * 126.46751 * 179.68562 * 2 1 3 9 9 C 1.50703 * 127.89652 * 359.97438 * 8 2 1 10 10 C 1.50696 * 109.47388 * 89.99850 * 9 8 2 11 11 H 1.08009 * 119.99783 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00255 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99778 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00081 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47364 * 59.99970 * 14 12 10 16 16 H 1.48501 * 109.47330 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47477 * 299.99792 * 14 12 10 18 18 H 1.09002 * 109.47152 * 90.02380 * 1 2 3 19 19 H 1.09001 * 109.46980 * 330.02481 * 1 2 3 20 20 H 1.09004 * 109.47113 * 210.02462 * 1 2 3 21 21 H 1.08997 * 109.46518 * 209.99658 * 9 8 2 22 22 H 1.09000 * 109.47097 * 329.99177 * 9 8 2 23 23 H 0.96997 * 120.00000 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0809 0.0000 4 1 1.9833 1.9957 -0.0004 5 8 3.4761 0.7746 0.0005 6 6 3.6219 -0.5594 0.0003 7 8 4.6704 -1.1832 0.0012 8 6 2.3158 -1.0943 0.0060 9 6 1.9096 -2.5455 0.0145 10 6 1.7737 -3.0375 -1.4034 11 1 1.9621 -2.3662 -2.2283 12 6 1.4087 -4.3444 -1.6477 13 7 1.1798 -5.1619 -0.6432 14 14 1.2395 -4.9540 -3.4052 15 1 2.5398 -4.8074 -4.1074 16 1 0.8406 -6.3844 -3.3969 17 1 0.2042 -4.1550 -4.1088 18 1 -0.3633 -0.0004 -1.0277 19 1 -0.3633 0.8902 0.5135 20 1 -0.3633 -0.8898 0.5142 21 1 2.6690 -3.1322 0.5314 22 1 0.9549 -2.6526 0.5294 23 1 0.9227 -6.0813 -0.8150 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254305.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:47 Heat of formation + Delta-G solvation = 17.130632 kcal Electronic energy + Delta-G solvation = -10920.723923 eV Core-core repulsion = 8737.988797 eV Total energy + Delta-G solvation = -2182.735126 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.32684 -37.16104 -35.09912 -32.84381 -30.91766 -28.66688 -27.42904 -23.58582 -21.14086 -20.43419 -18.39070 -17.46438 -16.10350 -15.37297 -14.66435 -14.45014 -13.18365 -12.94082 -12.60532 -12.45357 -12.17541 -11.75589 -11.21083 -10.74245 -10.57015 -9.99346 -9.70849 -9.33505 -9.23745 -8.31579 -7.19009 -5.93289 -3.96442 1.92836 2.71255 3.37115 3.41843 3.44542 3.60338 4.12867 4.52856 5.05732 5.35237 5.40084 5.78212 5.82744 6.16956 6.27930 6.95606 7.27367 7.61410 7.80708 8.01661 8.35066 8.46815 8.53351 9.06441 9.66068 11.15830 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.049770 B = 0.012854 C = 0.011745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.452679 B = 2177.780488 C = 2383.414045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.103 3.897 3 N -0.523 5.523 4 H 0.452 0.548 5 O -0.084 6.084 6 C 0.455 3.545 7 O -0.487 6.487 8 C -0.269 4.269 9 C 0.103 3.897 10 C -0.507 4.507 11 H 0.052 0.948 12 C 0.058 3.942 13 N -0.896 5.896 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.278 1.278 18 H 0.087 0.913 19 H 0.065 0.935 20 H 0.098 0.902 21 H 0.032 0.968 22 H 0.030 0.970 23 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.068 11.951 1.233 12.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.007 4.007 3 N -0.188 5.188 4 H 0.300 0.700 5 O -0.107 6.107 6 C 0.308 3.692 7 O -0.376 6.376 8 C -0.280 4.280 9 C 0.066 3.934 10 C -0.545 4.545 11 H 0.071 0.929 12 C -0.143 4.143 13 N -0.536 5.536 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 H 0.106 0.894 19 H 0.084 0.916 20 H 0.117 0.883 21 H 0.050 0.950 22 H 0.048 0.952 23 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.374 11.718 1.277 12.261 hybrid contribution -0.101 0.020 -1.040 1.045 sum -3.475 11.738 0.237 12.244 Atomic orbital electron populations 1.20431 0.85901 1.03821 1.04069 1.21475 0.95444 0.86581 0.97223 1.40553 0.94734 1.08619 1.74882 0.69967 1.84482 1.11344 1.32506 1.82331 1.20039 0.92304 0.77449 0.79426 1.91007 1.34747 1.58351 1.53542 1.21896 0.90791 0.99519 1.15771 1.17452 0.96546 0.82061 0.97331 1.21077 1.45930 0.95707 0.91812 0.92948 1.24979 0.95600 0.96712 0.97016 1.69941 1.47398 1.05758 1.30458 0.86633 0.78517 0.77626 0.85089 1.20249 1.21275 1.20324 0.89408 0.91603 0.88308 0.94993 0.95155 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.29 36.01 0.37 -0.70 14 2 C 0.10 1.73 7.23 -82.24 -0.59 1.13 14 3 N -0.52 -7.40 6.70 33.48 0.22 -7.18 14 4 H 0.45 3.91 8.96 -40.82 -0.37 3.55 14 5 O -0.08 -1.53 11.25 -7.39 -0.08 -1.61 14 6 C 0.46 10.58 8.65 31.83 0.28 10.86 14 7 O -0.49 -13.13 18.07 -19.22 -0.35 -13.48 14 8 C -0.27 -6.07 5.51 -104.30 -0.58 -6.64 14 9 C 0.10 2.77 5.38 -29.04 -0.16 2.61 14 10 C -0.51 -14.63 9.09 -34.44 -0.31 -14.94 14 11 H 0.05 1.50 7.74 -52.48 -0.41 1.10 14 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 14 13 N -0.90 -26.95 13.29 55.43 0.74 -26.21 14 14 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 14 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 14 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 14 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 14 18 H 0.09 1.06 8.14 -51.93 -0.42 0.64 14 19 H 0.07 0.56 8.14 -51.93 -0.42 0.14 14 20 H 0.10 1.38 7.40 -51.93 -0.38 0.99 14 21 H 0.03 0.95 8.14 -51.93 -0.42 0.53 14 22 H 0.03 0.80 7.41 -51.93 -0.38 0.41 14 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 14 LS Contribution 216.05 15.07 3.26 3.26 Total: -1.00 -34.84 216.05 -4.27 -39.11 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: -1.94 Total: -4.75 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.09 Total: -6.11 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.96 Total: -33.38 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.43 Total: -15.09 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -34.84 -4.27 -39.11 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254305.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.237 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds