Wall clock time and date at job start Mon Mar 30 2020 02:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99929 * 2 1 4 4 H 1.48500 * 109.46855 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47366 * 300.00252 * 3 2 1 6 6 H 1.48501 * 109.46940 * 60.00270 * 3 2 1 7 7 C 1.37879 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99573 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.51710 * 109.96434 * 180.02562 * 9 7 2 11 11 O 1.20752 * 121.14474 * 16.20169 * 10 9 7 12 12 C 1.51299 * 117.71678 * 196.22746 * 10 9 7 13 13 N 1.46965 * 109.05758 * 53.79283 * 12 10 9 14 14 C 1.46966 * 111.45098 * 300.10240 * 13 12 10 15 15 C 1.51295 * 109.05745 * 59.89888 * 14 13 12 16 16 O 1.20761 * 121.14529 * 126.18295 * 15 14 13 17 17 H 0.97007 * 119.99933 * 359.97438 * 1 2 3 18 18 H 1.08999 * 109.95652 * 301.22500 * 9 7 2 19 19 H 1.08998 * 109.53670 * 293.92309 * 12 10 9 20 20 H 1.08994 * 109.61237 * 173.70845 * 12 10 9 21 21 H 1.00901 * 110.99923 * 64.38094 * 13 12 10 22 22 H 1.09001 * 109.54076 * 179.77211 * 14 13 12 23 23 H 1.09001 * 109.53813 * 300.02731 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2269 -3.6607 -0.0005 11 8 3.3885 -3.5005 0.2878 12 6 1.6948 -5.0267 -0.3748 13 7 1.0181 -4.9380 -1.6764 14 6 -0.1031 -3.9887 -1.6356 15 6 0.4226 -2.6190 -1.2658 16 8 0.1911 -1.6543 -1.9544 17 1 -0.4850 0.8401 0.0004 18 1 0.6054 -2.5559 0.8758 19 1 0.9861 -5.3619 0.3824 20 1 2.5203 -5.7354 -0.4407 21 1 1.6703 -4.6961 -2.4073 22 1 -0.5790 -3.9442 -2.6152 23 1 -0.8292 -4.3138 -0.8905 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261286605.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:55 Heat of formation + Delta-G solvation = -90.543095 kcal Electronic energy + Delta-G solvation = -11227.427522 eV Core-core repulsion = 9040.023313 eV Total energy + Delta-G solvation = -2187.404209 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.11343 -39.29249 -36.73520 -34.98424 -31.50650 -29.60704 -27.03486 -24.35523 -21.82752 -20.10272 -18.65823 -17.43080 -16.90970 -16.61706 -16.19226 -15.96933 -15.65403 -14.78386 -14.62917 -13.84403 -13.64854 -12.94445 -12.88738 -12.52579 -12.45048 -12.18977 -11.75383 -11.47750 -10.66918 -10.08380 -9.31711 -8.27404 -6.36014 0.98694 1.30678 1.33073 1.44818 1.53021 2.34235 2.99932 3.09477 3.36147 3.60121 4.17842 4.24346 4.43074 4.72309 4.85335 5.05866 5.18962 5.60852 5.65424 5.90569 6.13560 6.62359 6.69353 7.13705 7.33643 8.82010 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.054373 B = 0.016730 C = 0.013762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.837379 B = 1673.205790 C = 2034.051695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.033 3.967 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.551 4.551 8 H 0.047 0.953 9 C -0.065 4.065 10 C 0.332 3.668 11 O -0.489 6.489 12 C 0.021 3.979 13 N -0.639 5.639 14 C 0.018 3.982 15 C 0.320 3.680 16 O -0.456 6.456 17 H 0.262 0.738 18 H 0.087 0.913 19 H 0.136 0.864 20 H 0.122 0.878 21 H 0.349 0.651 22 H 0.109 0.891 23 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.066 -9.505 -1.374 9.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.170 4.170 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.065 0.935 9 C -0.084 4.084 10 C 0.207 3.793 11 O -0.362 6.362 12 C -0.108 4.108 13 N -0.270 5.270 14 C -0.112 4.112 15 C 0.190 3.810 16 O -0.326 6.326 17 H 0.071 0.929 18 H 0.104 0.896 19 H 0.154 0.846 20 H 0.140 0.860 21 H 0.167 0.833 22 H 0.127 0.873 23 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.136 -9.323 -1.478 9.507 hybrid contribution 0.788 2.166 0.209 2.314 sum -0.348 -7.157 -1.270 7.277 Atomic orbital electron populations 1.69990 1.06951 1.27486 1.48419 1.25583 0.95663 1.02281 0.93426 0.85584 0.78827 0.79784 0.77953 1.19882 1.20713 1.19408 1.20953 0.92719 0.90979 1.54163 0.93485 1.20464 0.95940 0.94942 0.97030 1.26781 0.88340 0.93906 0.70267 1.90258 1.21217 1.87626 1.37106 1.23030 1.01685 0.92512 0.93619 1.60906 1.12461 1.48426 1.05239 1.23007 0.95467 0.87094 1.05627 1.26748 0.77827 0.90962 0.85425 1.90268 1.48714 1.43465 1.50111 0.92907 0.89574 0.84642 0.86040 0.83294 0.87284 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.82 11.45 21.45 0.25 -52.58 14 2 C 0.03 1.93 4.79 84.65 0.41 2.34 14 3 Si 0.95 46.62 29.54 68.60 2.03 48.65 14 4 H -0.27 -13.37 7.11 99.48 0.71 -12.66 14 5 H -0.28 -13.61 7.11 99.48 0.71 -12.90 14 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 14 7 C -0.55 -32.08 8.17 25.60 0.21 -31.87 14 8 H 0.05 2.89 6.99 -2.91 -0.02 2.87 14 9 C -0.06 -3.12 2.65 -12.39 -0.03 -3.15 14 10 C 0.33 13.35 6.70 29.61 0.20 13.55 14 11 O -0.49 -23.12 16.58 -1.43 -0.02 -23.14 14 12 C 0.02 0.55 6.71 85.74 0.58 1.13 14 13 N -0.64 -16.24 6.85 -519.61 -3.56 -19.80 14 14 C 0.02 0.53 6.71 85.73 0.58 1.10 14 15 C 0.32 14.24 6.38 29.61 0.19 14.43 14 16 O -0.46 -24.76 14.96 -1.45 -0.02 -24.78 14 17 H 0.26 14.85 8.31 -92.70 -0.77 14.08 14 18 H 0.09 4.25 8.14 -2.39 -0.02 4.23 14 19 H 0.14 2.79 8.14 -2.39 -0.02 2.77 14 20 H 0.12 2.67 8.14 -2.39 -0.02 2.65 14 21 H 0.35 8.86 8.87 -89.69 -0.80 8.07 14 22 H 0.11 2.95 8.14 -2.39 -0.02 2.93 14 23 H 0.13 3.12 8.14 -2.39 -0.02 3.10 14 Total: -1.00 -71.94 207.69 1.22 -70.72 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: 0.44 Total: 3.40 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 2.12 Total: -2.47 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -3.31 Total: -72.38 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -0.05 Total: -47.92 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -71.94 1.22 -70.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286605.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.823 kcal (2) G-P(sol) polarization free energy of solvation -71.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds