Wall clock time and date at job start Mon Mar 30 2020 02:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00055 * 2 1 4 4 H 1.48495 * 109.47196 * 266.49386 * 3 2 1 5 5 H 1.48505 * 109.46857 * 146.49286 * 3 2 1 6 6 H 1.48494 * 109.46928 * 26.49493 * 3 2 1 7 7 C 1.37880 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00066 * 169.26360 * 7 2 1 9 9 C 1.50700 * 119.99988 * 349.26455 * 7 2 1 10 10 H 1.09000 * 109.26563 * 54.82349 * 9 7 2 11 11 C 1.53133 * 109.26522 * 174.32995 * 9 7 2 12 12 C 1.51583 * 107.73684 * 165.20303 * 11 9 7 13 13 O 1.20765 * 121.40719 * 120.35033 * 12 11 9 14 14 C 1.51219 * 117.18410 * 300.36927 * 12 11 9 15 15 N 1.46012 * 109.24105 * 42.32204 * 14 12 11 16 16 C 1.33042 * 124.26938 * 346.36712 * 15 14 12 17 17 O 1.21280 * 117.44400 * 185.07021 * 16 15 14 18 18 H 0.97003 * 120.00269 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.80005 * 284.75538 * 11 9 7 20 20 H 1.09000 * 109.80897 * 45.63945 * 11 9 7 21 21 H 1.09002 * 109.51031 * 162.24981 * 14 12 11 22 22 H 1.08995 * 109.51348 * 282.39106 * 14 12 11 23 23 H 0.96998 * 117.86353 * 166.36687 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5708 2.0036 -1.3974 5 1 3.5077 1.4626 0.7729 6 1 1.4115 2.6729 0.6246 7 6 2.0045 -1.1941 0.0005 8 1 3.0703 -1.2024 -0.1737 9 6 1.2707 -2.4876 0.2442 10 1 0.4511 -2.5760 -0.4688 11 6 2.2366 -3.6603 0.0520 12 6 1.5906 -4.8937 0.6514 13 8 1.3600 -5.8719 -0.0182 14 6 1.2467 -4.8472 2.1233 15 7 0.6675 -3.5451 2.4412 16 6 0.7162 -2.4869 1.6364 17 8 0.2773 -1.4397 2.0627 18 1 -0.4851 0.8400 0.0004 19 1 2.4184 -3.8184 -1.0111 20 1 3.1773 -3.4514 0.5614 21 1 0.5263 -5.6321 2.3537 22 1 2.1507 -4.9973 2.7133 23 1 0.2179 -3.4452 3.2949 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288505.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:31 Heat of formation + Delta-G solvation = -92.316436 kcal Electronic energy + Delta-G solvation = -11160.608512 eV Core-core repulsion = 8973.127406 eV Total energy + Delta-G solvation = -2187.481107 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.29609 -39.61644 -35.90363 -35.39867 -32.96235 -29.10090 -27.33366 -24.61292 -22.52949 -19.39936 -18.78830 -17.88268 -17.23100 -16.48187 -16.11307 -15.79614 -15.59109 -15.12043 -14.49587 -14.10022 -13.42369 -13.34645 -12.79515 -12.49917 -12.43468 -11.74096 -11.52319 -10.64585 -10.46368 -10.15345 -9.82270 -8.13095 -6.21646 0.78172 1.42190 1.46506 1.54614 2.19226 2.48639 2.58941 3.05756 3.31013 3.88802 4.22547 4.32002 4.52981 4.58174 4.68971 5.15254 5.37373 5.74877 6.00985 6.18184 6.34178 6.58087 6.91596 7.47620 7.80132 8.98045 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.064158 B = 0.014320 C = 0.012884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.315896 B = 1954.905426 C = 2172.693456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.036 3.964 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.293 1.293 7 C -0.556 4.556 8 H 0.072 0.928 9 C 0.044 3.956 10 H 0.032 0.968 11 C -0.155 4.155 12 C 0.361 3.639 13 O -0.479 6.479 14 C 0.076 3.924 15 N -0.726 5.726 16 C 0.500 3.500 17 O -0.558 6.558 18 H 0.257 0.743 19 H 0.086 0.914 20 H 0.114 0.886 21 H 0.118 0.882 22 H 0.132 0.868 23 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.470 -7.954 4.354 10.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.169 4.169 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.189 1.189 6 H -0.219 1.219 7 C -0.593 4.593 8 H 0.090 0.910 9 C 0.022 3.978 10 H 0.050 0.950 11 C -0.192 4.192 12 C 0.238 3.762 13 O -0.353 6.353 14 C -0.048 4.048 15 N -0.384 5.384 16 C 0.288 3.712 17 O -0.434 6.434 18 H 0.066 0.934 19 H 0.104 0.896 20 H 0.132 0.868 21 H 0.136 0.864 22 H 0.150 0.850 23 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.061 -7.833 3.978 9.679 hybrid contribution -0.127 1.078 0.285 1.122 sum 3.934 -6.755 4.264 8.904 Atomic orbital electron populations 1.70080 1.07915 1.27171 1.46468 1.25719 0.95280 1.02760 0.93126 0.85652 0.78743 0.79260 0.78434 1.19341 1.18877 1.21936 1.21030 0.94753 0.90516 1.52982 0.90997 1.18466 0.95112 0.94655 0.89551 0.94972 1.22442 1.00855 0.92759 1.03187 1.25342 0.72898 0.86790 0.91191 1.90376 1.44670 1.35542 1.64702 1.22126 1.02752 0.86231 0.93719 1.45518 1.60341 1.10594 1.21916 1.21506 0.77714 0.82667 0.89341 1.90658 1.47179 1.31299 1.74302 0.93441 0.89552 0.86819 0.86417 0.85015 0.76346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.03 11.55 21.45 0.25 -53.79 14 2 C 0.04 2.03 4.54 84.66 0.38 2.42 14 3 Si 0.95 44.76 29.55 68.60 2.03 46.79 14 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 14 5 H -0.26 -11.88 7.11 99.48 0.71 -11.17 14 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 14 7 C -0.56 -30.09 8.32 25.60 0.21 -29.88 14 8 H 0.07 3.66 7.76 -2.91 -0.02 3.64 14 9 C 0.04 2.12 2.27 -12.51 -0.03 2.10 14 10 H 0.03 1.79 8.08 -2.39 -0.02 1.77 14 11 C -0.15 -5.66 5.57 30.17 0.17 -5.49 14 12 C 0.36 11.53 6.77 29.55 0.20 11.73 14 13 O -0.48 -17.17 17.92 -1.47 -0.03 -17.20 14 14 C 0.08 1.85 7.46 85.89 0.64 2.49 14 15 N -0.73 -24.36 5.44 -470.33 -2.56 -26.92 14 16 C 0.50 23.66 7.28 87.66 0.64 24.30 14 17 O -0.56 -32.06 14.50 -3.03 -0.04 -32.11 14 18 H 0.26 15.18 8.31 -92.71 -0.77 14.41 14 19 H 0.09 3.13 8.14 -2.39 -0.02 3.11 14 20 H 0.11 3.70 8.06 -2.39 -0.02 3.68 14 21 H 0.12 2.27 8.14 -2.39 -0.02 2.25 14 22 H 0.13 2.25 8.14 -2.39 -0.02 2.23 14 23 H 0.40 11.85 8.77 -92.71 -0.81 11.03 14 Total: -1.00 -71.34 207.90 2.28 -69.06 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 0.42 Total: 6.49 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 2.22 Total: 7.66 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -2.31 Total: -80.70 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -0.07 Total: -49.30 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -71.34 2.28 -69.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288505.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.254 kcal (2) G-P(sol) polarization free energy of solvation -71.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds