Wall clock time and date at job start Mon Mar 30 2020 02:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.52104 * 59.87291 * 9 7 2 11 11 C 1.53246 * 109.52128 * 179.97438 * 9 7 2 12 12 C 1.53242 * 108.56953 * 175.51890 * 11 9 7 13 13 C 1.50594 * 109.15722 * 304.38681 * 12 11 9 14 14 O 1.21224 * 119.35383 * 209.11054 * 13 12 11 15 15 N 1.34136 * 121.28385 * 29.09341 * 13 12 11 16 16 C 1.34147 * 122.58693 * 359.45218 * 15 13 12 17 17 O 1.21228 * 119.35901 * 180.54064 * 16 15 13 18 18 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.61873 * 295.24829 * 11 9 7 20 20 H 1.09003 * 109.62192 * 55.79377 * 11 9 7 21 21 H 1.08999 * 109.52191 * 64.28859 * 12 11 9 22 22 H 1.08993 * 109.52592 * 184.42060 * 12 11 9 23 23 H 0.96995 * 118.70929 * 179.45382 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6227 -2.5569 -0.8882 11 6 2.2458 -3.6648 0.0005 12 6 1.4610 -4.9761 0.1140 13 6 0.5893 -4.9257 1.3410 14 8 0.3112 -5.9565 1.9151 15 7 0.1149 -3.7625 1.8111 16 6 0.3908 -2.5835 1.2336 17 8 -0.0613 -1.5663 1.7137 18 1 -0.4850 -0.8401 0.0004 19 1 2.8165 -3.6589 -0.9281 20 1 2.9225 -3.5685 0.8497 21 1 0.8376 -5.1052 -0.7707 22 1 2.1568 -5.8112 0.1945 23 1 -0.4499 -3.7742 2.5995 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261325402.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:01 Heat of formation + Delta-G solvation = -99.030019 kcal Electronic energy + Delta-G solvation = -11248.769768 eV Core-core repulsion = 9060.997538 eV Total energy + Delta-G solvation = -2187.772230 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.22290 -39.80197 -36.45701 -35.65565 -33.55585 -29.83403 -25.88136 -24.48190 -23.74172 -20.34282 -18.80975 -18.40042 -17.87811 -17.04370 -15.87322 -15.66988 -15.52374 -15.19215 -14.59208 -14.01306 -13.52022 -12.94748 -12.57671 -12.44086 -11.88295 -11.70012 -11.23238 -11.14104 -10.94093 -10.68316 -10.42382 -8.47027 -6.28457 0.69665 1.57202 1.66377 1.80809 2.00554 2.04771 2.64216 3.20686 3.46121 4.03533 4.06780 4.11002 4.52745 4.75041 4.85590 4.99700 5.32671 5.34425 5.80348 6.10958 6.31557 6.53877 6.66801 7.14254 7.55334 8.88516 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.076942 B = 0.013826 C = 0.012414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.822049 B = 2024.655391 C = 2254.981100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.019 4.019 3 Si 1.117 2.883 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.296 1.296 7 C -0.625 4.625 8 H 0.063 0.937 9 C 0.009 3.991 10 H 0.053 0.947 11 C -0.096 4.096 12 C -0.133 4.133 13 C 0.530 3.470 14 O -0.555 6.555 15 N -0.679 5.679 16 C 0.498 3.502 17 O -0.515 6.515 18 H 0.266 0.734 19 H 0.104 0.896 20 H 0.062 0.938 21 H 0.127 0.873 22 H 0.135 0.865 23 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.500 -7.207 -1.824 8.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.223 4.223 3 Si 0.940 3.060 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.223 1.223 7 C -0.662 4.662 8 H 0.081 0.919 9 C -0.012 4.012 10 H 0.070 0.930 11 C -0.134 4.134 12 C -0.171 4.171 13 C 0.322 3.678 14 O -0.432 6.432 15 N -0.343 5.343 16 C 0.289 3.711 17 O -0.387 6.387 18 H 0.078 0.922 19 H 0.122 0.878 20 H 0.080 0.920 21 H 0.145 0.855 22 H 0.153 0.847 23 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.049 -5.559 -1.487 7.036 hybrid contribution -0.603 -1.466 0.743 1.751 sum 3.446 -7.025 -0.743 7.860 Atomic orbital electron populations 1.70681 1.08135 1.31596 1.43353 1.27080 0.96480 1.06442 0.92322 0.82942 0.74673 0.71606 0.76785 1.18914 1.20303 1.22264 1.22025 0.94499 0.91063 1.58610 0.91869 1.19273 0.94191 0.97841 0.89861 0.92955 1.21601 0.97253 0.90198 1.04306 1.22044 0.99161 1.01286 0.94648 1.21602 0.78528 0.81334 0.86320 1.90694 1.59071 1.33372 1.60103 1.45349 1.48873 1.08754 1.31338 1.23371 0.79304 0.81140 0.87328 1.90758 1.50004 1.34790 1.63111 0.92152 0.87767 0.91964 0.85518 0.84654 0.76541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.13 12.25 21.45 0.26 -54.87 14 2 C -0.02 -1.05 4.83 84.65 0.41 -0.64 14 3 Si 1.12 49.90 29.90 68.60 2.05 51.95 14 4 H -0.26 -10.63 7.11 99.48 0.71 -9.93 14 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 14 6 H -0.30 -13.52 7.11 99.48 0.71 -12.82 14 7 C -0.62 -32.65 8.47 25.60 0.22 -32.43 14 8 H 0.06 3.18 7.75 -2.91 -0.02 3.16 14 9 C 0.01 0.42 2.07 -12.24 -0.03 0.39 14 10 H 0.05 2.40 8.01 -2.39 -0.02 2.39 14 11 C -0.10 -3.06 5.31 30.76 0.16 -2.89 14 12 C -0.13 -3.41 6.07 29.90 0.18 -3.23 14 13 C 0.53 17.75 7.74 87.72 0.68 18.43 14 14 O -0.55 -20.62 17.87 -2.86 -0.05 -20.67 14 15 N -0.68 -25.70 5.09 -428.63 -2.18 -27.88 14 16 C 0.50 23.12 6.93 87.72 0.61 23.73 14 17 O -0.52 -28.99 13.44 -2.87 -0.04 -29.03 14 18 H 0.27 16.34 5.35 -92.71 -0.50 15.84 14 19 H 0.10 2.88 8.14 -2.39 -0.02 2.86 14 20 H 0.06 2.03 8.14 -2.39 -0.02 2.02 14 21 H 0.13 2.76 8.14 -2.39 -0.02 2.74 14 22 H 0.14 2.67 8.14 -2.39 -0.02 2.65 14 23 H 0.40 14.28 8.79 -92.71 -0.81 13.46 14 Total: -1.00 -68.87 203.76 2.96 -65.90 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.69 Total: 11.24 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 2.23 Total: 3.35 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -1.92 Total: -82.75 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -0.09 Total: -49.70 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 2.05 Total: 51.95 kcal Total: -68.87 2.96 -65.90 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325402.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.130 kcal (2) G-P(sol) polarization free energy of solvation -68.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds