Wall clock time and date at job start Mon Mar 30 2020 02:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48498 * 109.47131 * 264.73152 * 3 2 1 5 5 H 1.48494 * 109.47338 * 24.73140 * 3 2 1 6 6 H 1.48500 * 109.46689 * 144.73208 * 3 2 1 7 7 C 1.37878 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00264 * 6.78268 * 7 2 1 9 9 C 1.50699 * 119.99422 * 186.78404 * 7 2 1 10 10 H 1.08993 * 109.52764 * 335.33629 * 9 7 2 11 11 C 1.53251 * 109.57018 * 215.17634 * 9 7 2 12 12 C 1.53266 * 108.55171 * 184.43528 * 11 9 7 13 13 C 1.50593 * 109.14006 * 55.66551 * 12 11 9 14 14 O 1.21229 * 119.36069 * 150.87114 * 13 12 11 15 15 N 1.34137 * 121.27740 * 330.84842 * 13 12 11 16 16 C 1.34144 * 122.59089 * 0.56702 * 15 13 12 17 17 O 1.21226 * 119.36282 * 179.45566 * 16 15 13 18 18 H 0.96994 * 119.99666 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.62127 * 304.17291 * 11 9 7 20 20 H 1.09001 * 109.61921 * 64.73014 * 11 9 7 21 21 H 1.08998 * 109.56271 * 295.74818 * 12 11 9 22 22 H 1.09008 * 109.50571 * 175.54428 * 12 11 9 23 23 H 0.97002 * 118.70667 * 180.59785 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6080 1.9822 -1.3941 5 1 1.3954 2.6822 0.5857 6 1 3.4866 1.4749 0.8084 7 6 2.0046 -1.1941 -0.0005 8 1 1.4703 -2.1261 -0.1114 9 6 3.5037 -1.1986 0.1536 10 1 3.9070 -0.2423 -0.1792 11 6 4.1031 -2.3288 -0.6901 12 6 5.6126 -2.3833 -0.4304 13 6 5.8539 -2.5403 1.0478 14 8 6.8507 -3.1151 1.4295 15 7 4.9876 -2.0560 1.9502 16 6 3.8601 -1.4192 1.6000 17 8 3.1135 -1.0137 2.4647 18 1 -0.4849 0.8400 0.0004 19 1 3.6481 -3.2779 -0.4068 20 1 3.9204 -2.1332 -1.7467 21 1 6.0765 -1.4608 -0.7793 22 1 6.0429 -3.2322 -0.9619 23 1 5.1844 -2.1705 2.8931 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261325403.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:02 Heat of formation + Delta-G solvation = -109.263098 kcal Electronic energy + Delta-G solvation = -11137.880093 eV Core-core repulsion = 8949.664124 eV Total energy + Delta-G solvation = -2188.215969 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.19258 -39.70742 -36.54978 -35.38219 -33.93962 -30.54345 -26.15062 -24.43294 -23.46356 -19.95743 -19.38044 -18.37040 -17.85944 -16.95068 -16.39081 -15.60773 -15.45333 -15.18599 -14.70459 -13.91034 -13.66850 -13.45090 -12.79252 -12.42124 -11.85889 -11.64436 -11.43791 -11.18647 -11.16606 -11.02178 -10.65374 -8.34394 -6.42951 0.68242 1.33344 1.39181 1.44044 1.96494 2.03454 2.33439 2.99156 3.42839 4.04635 4.08251 4.14876 4.51294 4.69044 4.91575 5.04137 5.29336 5.38845 5.47729 6.04392 6.19323 6.52246 6.67061 7.07282 7.26858 8.81490 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.059523 B = 0.014889 C = 0.014355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.291460 B = 1880.095002 C = 1950.044798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.030 3.970 3 Si 0.936 3.064 4 H -0.240 1.240 5 H -0.293 1.293 6 H -0.260 1.260 7 C -0.511 4.511 8 H 0.043 0.957 9 C -0.008 4.008 10 H 0.089 0.911 11 C -0.101 4.101 12 C -0.135 4.135 13 C 0.531 3.469 14 O -0.551 6.551 15 N -0.678 5.678 16 C 0.508 3.492 17 O -0.537 6.537 18 H 0.269 0.731 19 H 0.060 0.940 20 H 0.110 0.890 21 H 0.135 0.865 22 H 0.136 0.864 23 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.534 -1.136 -3.388 12.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.170 4.170 3 Si 0.760 3.240 4 H -0.163 1.163 5 H -0.220 1.220 6 H -0.185 1.185 7 C -0.548 4.548 8 H 0.061 0.939 9 C -0.030 4.030 10 H 0.106 0.894 11 C -0.139 4.139 12 C -0.174 4.174 13 C 0.323 3.677 14 O -0.428 6.428 15 N -0.342 5.342 16 C 0.299 3.701 17 O -0.411 6.411 18 H 0.078 0.922 19 H 0.079 0.921 20 H 0.128 0.872 21 H 0.153 0.847 22 H 0.154 0.846 23 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 11.417 -1.082 -2.989 11.852 hybrid contribution -0.336 0.634 1.039 1.263 sum 11.082 -0.449 -1.950 11.261 Atomic orbital electron populations 1.70033 1.08418 1.28453 1.50344 1.25944 0.95384 1.03116 0.92587 0.85912 0.79111 0.78884 0.80110 1.16336 1.21961 1.18454 1.20731 0.89907 0.93803 1.50384 0.93911 1.19634 0.96830 0.99856 0.86647 0.89366 1.21720 0.92011 0.97676 1.02471 1.22117 0.98607 1.08373 0.88268 1.21645 0.80410 0.74511 0.91103 1.90711 1.28254 1.41228 1.82594 1.45204 1.22531 1.53961 1.12459 1.23034 0.77833 0.73815 0.95381 1.90626 1.49174 1.47957 1.53340 0.92232 0.92072 0.87168 0.84728 0.84572 0.76101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.96 21.45 0.30 -56.43 14 2 C 0.03 1.67 5.47 84.65 0.46 2.13 14 3 Si 0.94 41.95 27.04 68.60 1.86 43.81 14 4 H -0.24 -9.44 7.11 99.48 0.71 -8.74 14 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 14 6 H -0.26 -11.17 6.74 99.48 0.67 -10.50 14 7 C -0.51 -27.12 8.29 25.60 0.21 -26.91 14 8 H 0.04 2.52 8.06 -2.91 -0.02 2.50 14 9 C -0.01 -0.33 2.04 -12.24 -0.03 -0.36 14 10 H 0.09 3.35 5.20 -2.39 -0.01 3.34 14 11 C -0.10 -2.98 5.36 30.77 0.16 -2.81 14 12 C -0.13 -3.03 6.07 29.90 0.18 -2.85 14 13 C 0.53 15.94 7.74 87.72 0.68 16.62 14 14 O -0.55 -18.75 17.88 -2.87 -0.05 -18.80 14 15 N -0.68 -22.99 5.09 -428.62 -2.18 -25.18 14 16 C 0.51 21.46 7.43 87.72 0.65 22.11 14 17 O -0.54 -27.60 17.12 -2.86 -0.05 -27.65 14 18 H 0.27 15.29 8.31 -92.71 -0.77 14.52 14 19 H 0.06 1.90 8.14 -2.39 -0.02 1.88 14 20 H 0.11 2.82 8.14 -2.39 -0.02 2.80 14 21 H 0.13 2.34 8.14 -2.39 -0.02 2.32 14 22 H 0.14 2.32 8.14 -2.38 -0.02 2.30 14 23 H 0.40 12.68 8.79 -92.71 -0.81 11.87 14 Total: -1.00 -69.43 207.37 2.58 -66.85 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.39 Total: 9.48 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 2.33 Total: 7.92 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -1.88 Total: -81.61 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -0.10 Total: -46.45 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.86 Total: 43.81 kcal Total: -69.43 2.58 -66.85 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325403.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.413 kcal (2) G-P(sol) polarization free energy of solvation -69.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds