Wall clock time and date at job start Mon Mar 30 2020 02:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.53671 * 303.59957 * 10 9 7 12 12 C 1.54225 * 110.60568 * 180.58888 * 10 9 7 13 13 C 1.51317 * 103.55091 * 241.48029 * 12 10 9 14 14 O 1.21227 * 125.39402 * 179.97438 * 13 12 10 15 15 N 1.33872 * 109.20904 * 0.02562 * 13 12 10 16 16 C 1.33874 * 114.47391 * 359.97438 * 15 13 12 17 17 O 1.21227 * 125.39651 * 179.97438 * 16 15 13 18 18 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 20 20 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 21 21 H 1.09007 * 110.60740 * 359.97438 * 12 10 9 22 22 H 1.08998 * 110.60728 * 122.96296 * 12 10 9 23 23 H 0.97004 * 122.75865 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9232 -3.5856 -0.8497 12 6 1.5010 -5.0127 -0.0143 13 6 1.9348 -5.6709 1.2773 14 8 1.5769 -6.7627 1.6638 15 7 2.7757 -4.8559 1.9261 16 6 3.0212 -3.6989 1.2990 17 8 3.7492 -2.8197 1.7073 18 1 -0.4850 -0.8401 -0.0004 19 1 0.6242 -2.5567 0.8904 20 1 0.6248 -2.5571 -0.8896 21 1 0.4222 -4.8561 -0.0212 22 1 1.8086 -5.6109 -0.8719 23 1 3.1749 -5.0853 2.7799 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261332783.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:26 Heat of formation + Delta-G solvation = -109.251542 kcal Electronic energy + Delta-G solvation = -10898.987253 eV Core-core repulsion = 8710.771785 eV Total energy + Delta-G solvation = -2188.215468 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.72010 -39.64670 -37.00154 -35.91001 -33.65510 -29.47963 -26.43312 -24.71479 -22.68459 -21.49002 -19.09937 -18.80209 -17.56815 -17.05171 -16.03757 -15.64076 -15.37376 -15.28050 -14.78921 -14.35763 -13.64066 -13.12793 -12.84748 -12.48288 -11.98374 -11.78374 -11.73631 -11.39392 -10.98308 -10.61245 -10.47516 -8.61136 -6.30423 0.50128 1.54638 1.61945 1.71827 1.81415 1.87420 2.58732 3.19906 3.25338 3.37641 3.59578 4.06087 4.59466 4.73502 4.78096 5.03450 5.17820 5.30021 5.62726 6.01515 6.25061 6.31339 6.65970 6.90689 7.45828 8.80707 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.071392 B = 0.011636 C = 0.010555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.107226 B = 2405.793270 C = 2652.217396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.036 4.036 3 Si 1.108 2.892 4 H -0.284 1.284 5 H -0.266 1.266 6 H -0.283 1.283 7 C -0.606 4.606 8 H 0.053 0.947 9 C 0.024 3.976 10 C -0.107 4.107 11 H 0.129 0.871 12 C -0.144 4.144 13 C 0.541 3.459 14 O -0.522 6.522 15 N -0.676 5.676 16 C 0.536 3.464 17 O -0.506 6.506 18 H 0.258 0.742 19 H -0.007 1.007 20 H 0.029 0.971 21 H 0.126 0.874 22 H 0.155 0.845 23 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.302 -8.915 -0.816 9.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.233 4.233 3 Si 0.931 3.069 4 H -0.210 1.210 5 H -0.191 1.191 6 H -0.209 1.209 7 C -0.644 4.644 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.128 4.128 11 H 0.147 0.853 12 C -0.183 4.183 13 C 0.331 3.669 14 O -0.397 6.397 15 N -0.341 5.341 16 C 0.324 3.676 17 O -0.377 6.377 18 H 0.068 0.932 19 H 0.011 0.989 20 H 0.047 0.953 21 H 0.144 0.856 22 H 0.173 0.827 23 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.252 -7.334 -0.561 8.496 hybrid contribution 0.236 -1.639 0.738 1.813 sum 4.488 -8.973 0.177 10.034 Atomic orbital electron populations 1.70931 1.07744 1.29987 1.49302 1.27090 0.96600 1.06360 0.93291 0.83024 0.74189 0.71978 0.77705 1.20957 1.19075 1.20871 1.22435 0.94962 0.93050 1.53930 0.92888 1.19103 0.93774 0.92220 0.96217 1.22032 0.98566 0.96248 0.95958 0.85278 1.22689 1.04303 0.94704 0.96593 1.21066 0.75715 0.83120 0.86960 1.90759 1.56471 1.20137 1.72344 1.44748 1.44882 1.19368 1.25084 1.21136 0.79598 0.79492 0.87326 1.90737 1.37012 1.39109 1.70882 0.93212 0.98859 0.95314 0.85551 0.82740 0.74320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.62 13.65 21.45 0.29 -56.33 14 2 C -0.04 -2.04 5.46 84.65 0.46 -1.57 14 3 Si 1.11 51.00 29.90 68.60 2.05 53.05 14 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 14 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 14 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 14 7 C -0.61 -33.07 8.31 25.60 0.21 -32.86 14 8 H 0.05 2.94 6.94 -2.91 -0.02 2.92 14 9 C 0.02 1.11 3.62 29.85 0.11 1.21 14 10 C -0.11 -3.62 3.08 -10.93 -0.03 -3.66 14 11 H 0.13 4.02 8.14 -2.38 -0.02 4.00 14 12 C -0.14 -3.54 6.67 30.46 0.20 -3.34 14 13 C 0.54 15.13 8.55 87.99 0.75 15.89 14 14 O -0.52 -16.82 18.02 -2.87 -0.05 -16.87 14 15 N -0.68 -19.54 5.48 -427.81 -2.34 -21.88 14 16 C 0.54 19.56 7.76 87.99 0.68 20.24 14 17 O -0.51 -22.80 16.58 -2.87 -0.05 -22.85 14 18 H 0.26 15.35 7.22 -92.71 -0.67 14.68 14 19 H -0.01 -0.34 8.01 -2.39 -0.02 -0.36 14 20 H 0.03 1.31 8.01 -2.39 -0.02 1.29 14 21 H 0.13 3.03 7.74 -2.38 -0.02 3.01 14 22 H 0.15 2.62 8.14 -2.39 -0.02 2.60 14 23 H 0.42 10.31 8.96 -92.71 -0.83 9.48 14 Total: -1.00 -68.92 211.57 2.79 -66.13 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 0.50 Total: 2.85 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 2.39 Total: -4.09 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -2.05 Total: -78.21 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -0.10 Total: -39.73 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Total: -68.92 2.79 -66.13 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261332783.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.126 kcal (2) G-P(sol) polarization free energy of solvation -68.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds