Wall clock time and date at job start Mon Mar 30 2020 02:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.54149 * 56.38832 * 10 9 7 12 12 C 1.54220 * 110.60661 * 179.40859 * 10 9 7 13 13 C 1.51310 * 103.55698 * 118.51429 * 12 10 9 14 14 O 1.21236 * 125.39733 * 179.97438 * 13 12 10 15 15 N 1.33874 * 109.20665 * 0.02562 * 13 12 10 16 16 C 1.33879 * 114.47509 * 359.97438 * 15 13 12 17 17 O 1.21224 * 125.39091 * 180.02562 * 16 15 13 18 18 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 20 20 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 21 21 H 1.09008 * 110.60404 * 237.03202 * 12 10 9 22 22 H 1.09000 * 110.60899 * 359.97438 * 12 10 9 23 23 H 0.97005 * 122.75951 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 1 2.9226 -3.5860 0.8491 12 6 1.5008 -5.0126 0.0123 13 6 1.9354 -5.6703 -1.2793 14 8 1.5783 -6.7624 -1.6660 15 7 2.7776 -4.8557 -1.9267 16 6 3.0226 -3.6987 -1.2991 17 8 3.7516 -2.8198 -1.7062 18 1 -0.4850 -0.8401 -0.0004 19 1 0.6241 -2.5574 0.8881 20 1 0.6247 -2.5564 -0.8919 21 1 1.8079 -5.6113 0.8699 22 1 0.4221 -4.8561 0.0194 23 1 3.1769 -5.0845 -2.7806 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261332784.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:28 Heat of formation + Delta-G solvation = -84.878097 kcal Electronic energy + Delta-G solvation = -10897.698303 eV Core-core repulsion = 8710.539747 eV Total energy + Delta-G solvation = -2187.158556 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.32944 -38.18550 -35.48161 -34.08872 -31.93603 -27.82551 -24.76932 -22.80221 -21.36434 -20.00688 -17.56020 -16.95952 -16.11282 -15.60223 -14.59043 -13.84278 -13.73207 -13.64786 -13.18436 -12.86889 -11.89567 -11.35806 -11.18194 -10.66727 -10.30439 -10.21923 -10.01119 -9.97704 -9.41382 -8.59754 -8.36046 -6.38616 -4.08499 1.87567 3.09728 3.20320 3.46394 3.50077 3.67773 4.52101 4.53637 4.76493 4.95262 5.30639 5.38706 5.84396 6.06815 6.19821 6.33446 6.94399 7.09584 7.15118 7.62633 8.06991 8.27814 8.48453 8.84748 9.61627 11.01735 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.071373 B = 0.011636 C = 0.010554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.209768 B = 2405.789796 C = 2652.471406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.017 3.983 3 Si 1.069 2.931 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.599 4.599 8 H 0.062 0.938 9 C 0.024 3.976 10 C -0.109 4.109 11 H 0.114 0.886 12 C -0.160 4.160 13 C 0.534 3.466 14 O -0.507 6.507 15 N -0.687 5.687 16 C 0.533 3.467 17 O -0.461 6.461 18 H 0.266 0.734 19 H 0.028 0.972 20 H 0.012 0.988 21 H 0.113 0.887 22 H 0.118 0.882 23 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.805 -8.043 0.213 8.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.187 4.187 3 Si 0.897 3.103 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.637 4.637 8 H 0.080 0.920 9 C -0.013 4.013 10 C -0.131 4.131 11 H 0.132 0.868 12 C -0.200 4.200 13 C 0.323 3.677 14 O -0.381 6.381 15 N -0.353 5.353 16 C 0.321 3.679 17 O -0.330 6.330 18 H 0.077 0.923 19 H 0.046 0.954 20 H 0.030 0.970 21 H 0.131 0.869 22 H 0.136 0.864 23 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 3.759 -6.414 -0.040 7.435 hybrid contribution 0.390 -1.838 -0.530 1.952 sum 4.149 -8.252 -0.571 9.254 Atomic orbital electron populations 1.70824 1.06911 1.30383 1.46903 1.25821 0.96416 1.02815 0.93613 0.83534 0.74863 0.75171 0.76713 1.20914 1.21367 1.21343 1.22048 0.95052 0.91166 1.55436 0.92021 1.19227 0.93166 0.91667 0.97263 1.22152 0.99182 0.96014 0.95712 0.86814 1.22684 1.04351 0.97077 0.95864 1.20918 0.76393 0.83608 0.86829 1.90748 1.56073 1.19394 1.71896 1.44943 1.45108 1.20439 1.24777 1.21024 0.80415 0.79421 0.87018 1.90757 1.34958 1.37415 1.69821 0.92330 0.95372 0.96991 0.86905 0.86386 0.75575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.31 13.65 55.43 0.76 -26.55 14 2 C 0.02 0.48 5.46 -17.82 -0.10 0.38 14 3 Si 1.07 25.49 29.90 -169.99 -5.08 20.41 14 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 14 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 14 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 14 7 C -0.60 -16.42 8.31 -34.44 -0.29 -16.71 14 8 H 0.06 1.72 6.94 -52.49 -0.36 1.36 14 9 C 0.02 0.56 3.62 -27.88 -0.10 0.45 14 10 C -0.11 -1.97 3.08 -90.83 -0.28 -2.25 14 11 H 0.11 1.93 8.14 -51.93 -0.42 1.50 14 12 C -0.16 -2.25 6.67 -26.95 -0.18 -2.43 14 13 C 0.53 8.22 8.55 -11.09 -0.09 8.13 14 14 O -0.51 -8.87 18.02 5.60 0.10 -8.77 14 15 N -0.69 -10.60 5.48 -11.39 -0.06 -10.67 14 16 C 0.53 10.09 7.76 -11.09 -0.09 10.00 14 17 O -0.46 -10.47 16.58 5.61 0.09 -10.37 14 18 H 0.27 7.80 7.22 -40.82 -0.29 7.51 14 19 H 0.03 0.66 8.01 -51.93 -0.42 0.24 14 20 H 0.01 0.29 8.01 -51.93 -0.42 -0.12 14 21 H 0.11 1.25 8.14 -51.92 -0.42 0.83 14 22 H 0.12 1.61 7.74 -51.93 -0.40 1.21 14 23 H 0.41 5.36 8.96 -40.82 -0.37 5.00 14 LS Contribution 211.57 15.07 3.19 3.19 Total: -1.00 -32.38 211.57 -4.03 -36.41 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -1.90 Total: -1.22 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.13 Total: -2.42 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.69 Total: -37.21 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.19 Total: -19.15 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.41 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -32.38 -4.03 -36.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261332784.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.472 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds