Wall clock time and date at job start Mon Mar 30 2020 02:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.54149 * 56.38832 * 10 9 7 12 12 C 1.54220 * 110.60661 * 179.40859 * 10 9 7 13 13 C 1.51310 * 103.55698 * 118.51429 * 12 10 9 14 14 O 1.21236 * 125.39733 * 179.97438 * 13 12 10 15 15 N 1.33874 * 109.20665 * 0.02562 * 13 12 10 16 16 C 1.33879 * 114.47509 * 359.97438 * 15 13 12 17 17 O 1.21224 * 125.39091 * 180.02562 * 16 15 13 18 18 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 20 20 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 21 21 H 1.09008 * 110.60404 * 237.03202 * 12 10 9 22 22 H 1.09000 * 110.60899 * 359.97438 * 12 10 9 23 23 H 0.97005 * 122.75951 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 1 2.9226 -3.5860 0.8491 12 6 1.5008 -5.0126 0.0123 13 6 1.9354 -5.6703 -1.2793 14 8 1.5783 -6.7624 -1.6660 15 7 2.7776 -4.8557 -1.9267 16 6 3.0226 -3.6987 -1.2991 17 8 3.7516 -2.8198 -1.7062 18 1 -0.4850 -0.8401 -0.0004 19 1 0.6241 -2.5574 0.8881 20 1 0.6247 -2.5564 -0.8919 21 1 1.8079 -5.6113 0.8699 22 1 0.4221 -4.8561 0.0194 23 1 3.1769 -5.0845 -2.7806 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261332784.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:28 Heat of formation + Delta-G solvation = -109.269377 kcal Electronic energy + Delta-G solvation = -10898.755989 eV Core-core repulsion = 8710.539747 eV Total energy + Delta-G solvation = -2188.216241 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.71949 -39.64600 -37.00186 -35.90926 -33.65496 -29.47945 -26.43333 -24.71530 -22.68480 -21.48971 -19.09926 -18.80229 -17.56799 -17.05199 -16.03723 -15.64082 -15.37345 -15.28029 -14.78954 -14.35779 -13.64087 -13.12781 -12.84756 -12.48291 -11.98379 -11.78383 -11.73658 -11.39396 -10.98328 -10.61284 -10.47471 -8.61151 -6.30433 0.50094 1.54634 1.61951 1.71822 1.81412 1.87368 2.58726 3.19890 3.25355 3.37602 3.59578 4.06062 4.59489 4.73471 4.78139 5.03422 5.17824 5.30041 5.62699 6.01491 6.25055 6.31341 6.65957 6.90659 7.45809 8.80694 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.071373 B = 0.011636 C = 0.010554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.209768 B = 2405.789796 C = 2652.471406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.036 4.036 3 Si 1.108 2.892 4 H -0.284 1.284 5 H -0.266 1.266 6 H -0.283 1.283 7 C -0.606 4.606 8 H 0.053 0.947 9 C 0.024 3.976 10 C -0.107 4.107 11 H 0.129 0.871 12 C -0.144 4.144 13 C 0.541 3.459 14 O -0.522 6.522 15 N -0.676 5.676 16 C 0.536 3.464 17 O -0.506 6.506 18 H 0.258 0.742 19 H 0.029 0.971 20 H -0.007 1.007 21 H 0.155 0.845 22 H 0.127 0.873 23 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.297 -8.912 0.809 9.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.233 4.233 3 Si 0.931 3.069 4 H -0.210 1.210 5 H -0.191 1.191 6 H -0.209 1.209 7 C -0.644 4.644 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.128 4.128 11 H 0.147 0.853 12 C -0.183 4.183 13 C 0.331 3.669 14 O -0.397 6.397 15 N -0.341 5.341 16 C 0.324 3.676 17 O -0.377 6.377 18 H 0.068 0.932 19 H 0.047 0.953 20 H 0.011 0.989 21 H 0.173 0.827 22 H 0.145 0.855 23 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.249 -7.331 0.555 8.492 hybrid contribution 0.236 -1.638 -0.739 1.813 sum 4.485 -8.970 -0.184 10.030 Atomic orbital electron populations 1.70933 1.07743 1.29986 1.49300 1.27092 0.96600 1.06359 0.93290 0.83024 0.74190 0.71979 0.77705 1.20958 1.19076 1.20869 1.22438 0.94962 0.93049 1.53934 0.92885 1.19103 0.93774 0.92218 0.96219 1.22029 0.98549 0.96250 0.95970 0.85286 1.22686 1.04308 0.94713 0.96589 1.21066 0.75725 0.83121 0.86947 1.90761 1.56546 1.20107 1.72301 1.44751 1.44825 1.19400 1.25109 1.21139 0.79626 0.79484 0.87303 1.90736 1.36992 1.39124 1.70887 0.93211 0.95312 0.98854 0.82742 0.85546 0.74320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.62 13.65 21.45 0.29 -56.32 14 2 C -0.04 -2.04 5.46 84.66 0.46 -1.57 14 3 Si 1.11 50.99 29.90 68.60 2.05 53.04 14 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 14 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 14 6 H -0.28 -12.69 7.11 99.48 0.71 -11.99 14 7 C -0.61 -33.08 8.31 25.60 0.21 -32.86 14 8 H 0.05 2.94 6.94 -2.91 -0.02 2.92 14 9 C 0.02 1.11 3.62 29.85 0.11 1.21 14 10 C -0.11 -3.62 3.08 -10.93 -0.03 -3.66 14 11 H 0.13 4.02 8.14 -2.39 -0.02 4.00 14 12 C -0.14 -3.54 6.67 30.46 0.20 -3.34 14 13 C 0.54 15.14 8.55 87.99 0.75 15.89 14 14 O -0.52 -16.82 18.02 -2.89 -0.05 -16.88 14 15 N -0.68 -19.54 5.48 -427.79 -2.34 -21.88 14 16 C 0.54 19.56 7.76 87.99 0.68 20.24 14 17 O -0.51 -22.80 16.58 -2.86 -0.05 -22.85 14 18 H 0.26 15.34 7.22 -92.71 -0.67 14.67 14 19 H 0.03 1.31 8.01 -2.39 -0.02 1.30 14 20 H -0.01 -0.34 8.01 -2.39 -0.02 -0.36 14 21 H 0.15 2.62 8.14 -2.38 -0.02 2.60 14 22 H 0.13 3.03 7.74 -2.39 -0.02 3.01 14 23 H 0.42 10.31 8.96 -92.70 -0.83 9.48 14 Total: -1.00 -68.91 211.57 2.79 -66.11 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: 0.50 Total: 2.85 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 2.39 Total: -4.09 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -2.05 Total: -78.20 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.10 Total: -39.72 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.05 Total: 53.04 kcal Total: -68.91 2.79 -66.11 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261332784.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.155 kcal (2) G-P(sol) polarization free energy of solvation -68.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds