Wall clock time and date at job start Mon Mar 30 2020 01:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47337 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47146 * 119.99673 * 8 6 4 11 11 H 1.48499 * 109.47460 * 239.99758 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 N 1.40101 * 120.00321 * 89.99680 * 12 2 1 14 14 C 1.28001 * 120.00011 * 180.02562 * 13 12 2 15 15 C 1.51409 * 136.31843 * 359.62674 * 14 13 12 16 16 C 1.53374 * 87.52071 * 206.05902 * 15 14 13 17 17 C 1.51411 * 136.31825 * 180.02562 * 14 13 12 18 18 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 19 19 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 20 20 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 21 21 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 22 22 H 0.97004 * 119.99553 * 269.99763 * 12 2 1 23 23 H 1.09000 * 113.56170 * 320.64197 * 15 14 13 24 24 H 1.09003 * 113.55662 * 91.37260 * 15 14 13 25 25 H 1.09001 * 113.97083 * 220.29447 * 16 15 14 26 26 H 1.09001 * 113.59691 * 88.79831 * 16 15 14 27 27 H 1.09001 * 113.55854 * 268.62519 * 17 14 13 28 28 H 1.09001 * 113.55831 * 39.35824 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.1456 -2.2877 3.6036 10 1 3.1466 -0.1875 4.8164 11 1 1.1661 -1.5869 4.8159 12 7 2.0184 -0.6905 -1.1962 13 7 2.2519 0.0301 -2.3748 14 6 2.6781 -0.5733 -3.4201 15 6 3.0490 -1.9940 -3.7896 16 6 3.9781 -1.4031 -4.8573 17 6 3.0434 -0.1837 -4.8369 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 0.7094 1.1615 3.4845 22 1 2.1801 -1.6466 -1.1722 23 1 3.5788 -2.5256 -2.9992 24 1 2.2192 -2.5674 -4.2030 25 1 3.9707 -1.9479 -5.8013 26 1 4.9836 -1.1930 -4.4928 27 1 2.2121 -0.2602 -5.5378 28 1 3.5686 0.7689 -4.9052 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306426548.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:04 Heat of formation + Delta-G solvation = 54.065841 kcal Electronic energy + Delta-G solvation = -10661.655391 eV Core-core repulsion = 8714.073652 eV Total energy + Delta-G solvation = -1947.581738 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.38051 -35.49729 -33.19771 -30.64662 -26.91503 -25.40139 -25.15370 -22.55464 -20.29989 -18.38244 -16.61638 -15.66789 -15.27421 -14.95257 -13.79352 -12.89648 -12.48794 -12.25054 -12.15492 -11.92432 -11.28212 -11.10082 -10.99528 -10.70524 -10.48309 -10.25167 -10.16372 -10.00776 -9.12440 -8.86018 -8.48049 -6.79965 -6.09936 -4.17679 3.02702 3.25251 3.32591 3.36210 3.79713 4.38918 4.84868 4.91110 5.22155 5.35428 5.61108 5.74562 5.85104 6.00566 6.02727 6.22575 6.46852 6.83314 7.05485 7.19590 7.26412 7.64233 7.86518 7.93567 8.24615 8.41210 8.92270 9.48621 9.54502 10.96046 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.070510 B = 0.008861 C = 0.008225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.013363 B = 3159.004227 C = 3403.242617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.299 3.701 3 H 0.039 0.961 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.637 5.637 13 N -0.188 5.188 14 C -0.039 4.039 15 C -0.121 4.121 16 C -0.131 4.131 17 C -0.058 4.058 18 H 0.024 0.976 19 H 0.089 0.911 20 H 0.011 0.989 21 H 0.263 0.737 22 H 0.368 0.632 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -4.032 -9.989 11.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.196 3.804 3 H 0.057 0.943 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.373 5.373 13 N 0.004 4.996 14 C -0.235 4.235 15 C -0.162 4.162 16 C -0.170 4.170 17 C -0.097 4.097 18 H 0.044 0.956 19 H 0.107 0.893 20 H 0.030 0.970 21 H 0.073 0.927 22 H 0.203 0.797 23 H 0.082 0.918 24 H 0.102 0.898 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.652 -2.875 -9.284 10.074 hybrid contribution 0.464 -1.625 0.782 1.862 sum 3.116 -4.500 -8.502 10.111 Atomic orbital electron populations 1.22205 0.99257 0.99055 1.00385 1.18472 0.89983 0.93454 0.78460 0.94306 1.21296 1.31919 1.13143 0.90283 0.92260 1.24868 0.94902 0.95036 0.98935 1.69914 1.36262 1.22617 1.23694 0.86376 0.78585 0.79540 0.82502 1.19802 1.20851 1.20871 1.48724 1.74509 1.07560 1.06484 1.73133 1.05875 1.26837 0.93723 1.25090 1.07224 0.95493 0.95685 1.22376 0.99104 0.95966 0.98746 1.22528 0.97984 0.97661 0.98796 1.21820 0.98256 0.98540 0.91118 0.95641 0.89263 0.96973 0.92688 0.79712 0.91813 0.89783 0.91058 0.90088 0.89421 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.29 37.16 0.35 -3.50 15 2 C 0.30 7.98 3.23 -69.08 -0.22 7.76 15 3 H 0.04 1.15 8.14 -51.93 -0.42 0.73 15 4 C -0.53 -14.65 8.74 -34.44 -0.30 -14.95 15 5 H 0.06 1.62 7.79 -52.48 -0.41 1.21 15 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 15 7 N -0.89 -25.28 11.32 55.43 0.63 -24.65 15 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 15 9 H -0.27 -6.34 7.11 56.52 0.40 -5.93 15 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 12 N -0.64 -15.08 6.09 -5.88 -0.04 -15.11 15 13 N -0.19 -4.16 11.50 35.93 0.41 -3.74 15 14 C -0.04 -0.70 8.47 -78.23 -0.66 -1.36 15 15 C -0.12 -1.72 7.63 -27.56 -0.21 -1.93 15 16 C -0.13 -1.52 8.17 -26.21 -0.21 -1.74 15 17 C -0.06 -0.76 7.95 -27.41 -0.22 -0.97 15 18 H 0.02 0.62 8.14 -51.93 -0.42 0.19 15 19 H 0.09 2.44 6.07 -51.93 -0.32 2.12 15 20 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 15 21 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 22 H 0.37 8.19 8.34 -182.59 -1.52 6.67 15 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 15 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 LS Contribution 242.33 15.07 3.65 3.65 Total: -1.00 -29.35 242.33 -7.13 -36.48 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.19 Total: 2.21 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -1.58 Total: -14.98 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 1.00 Total: -43.51 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.35 -7.13 -36.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306426548.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.543 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds