Wall clock time and date at job start Mon Mar 30 2020 01:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47337 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47146 * 119.99673 * 8 6 4 11 11 H 1.48499 * 109.47460 * 239.99758 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 N 1.40101 * 120.00321 * 89.99680 * 12 2 1 14 14 C 1.28001 * 120.00011 * 180.02562 * 13 12 2 15 15 C 1.51409 * 136.31843 * 359.62674 * 14 13 12 16 16 C 1.53374 * 87.52071 * 206.05902 * 15 14 13 17 17 C 1.51411 * 136.31825 * 180.02562 * 14 13 12 18 18 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 19 19 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 20 20 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 21 21 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 22 22 H 0.97004 * 119.99553 * 269.99763 * 12 2 1 23 23 H 1.09000 * 113.56170 * 320.64197 * 15 14 13 24 24 H 1.09003 * 113.55662 * 91.37260 * 15 14 13 25 25 H 1.09001 * 113.97083 * 220.29447 * 16 15 14 26 26 H 1.09001 * 113.59691 * 88.79831 * 16 15 14 27 27 H 1.09001 * 113.55854 * 268.62519 * 17 14 13 28 28 H 1.09001 * 113.55831 * 39.35824 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.1456 -2.2877 3.6036 10 1 3.1466 -0.1875 4.8164 11 1 1.1661 -1.5869 4.8159 12 7 2.0184 -0.6905 -1.1962 13 7 2.2519 0.0301 -2.3748 14 6 2.6781 -0.5733 -3.4201 15 6 3.0490 -1.9940 -3.7896 16 6 3.9781 -1.4031 -4.8573 17 6 3.0434 -0.1837 -4.8369 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 0.7094 1.1615 3.4845 22 1 2.1801 -1.6466 -1.1722 23 1 3.5788 -2.5256 -2.9992 24 1 2.2192 -2.5674 -4.2030 25 1 3.9707 -1.9479 -5.8013 26 1 4.9836 -1.1930 -4.4928 27 1 2.2121 -0.2602 -5.5378 28 1 3.5686 0.7689 -4.9052 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306426548.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:04 Heat of formation + Delta-G solvation = 35.130377 kcal Electronic energy + Delta-G solvation = -10662.476494 eV Core-core repulsion = 8714.073652 eV Total energy + Delta-G solvation = -1948.402842 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.65037 -37.28366 -35.04037 -32.56896 -28.68153 -27.29734 -26.52216 -23.76978 -22.26444 -19.92587 -18.37516 -17.22304 -16.96193 -16.35596 -15.59684 -14.62014 -14.35165 -13.80397 -13.52387 -13.25792 -13.02780 -12.88968 -12.73286 -12.31488 -12.14420 -12.08839 -11.64048 -11.58512 -11.08638 -10.59380 -10.37559 -8.54568 -8.18606 -6.36279 1.41226 1.41452 1.54135 1.59509 2.17081 2.45960 3.09435 3.66814 3.83659 4.25328 4.37001 4.63147 4.75265 4.82299 4.89097 4.96157 5.08641 5.11206 5.14077 5.42098 5.49096 5.59961 5.81934 5.94613 6.26895 6.45179 6.86664 7.35906 7.93706 8.86628 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.070510 B = 0.008861 C = 0.008225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.013363 B = 3159.004227 C = 3403.242617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.307 3.693 3 H -0.004 1.004 4 C -0.547 4.547 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.973 3.027 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.275 1.275 12 N -0.654 5.654 13 N -0.250 5.250 14 C -0.029 4.029 15 C -0.125 4.125 16 C -0.113 4.113 17 C -0.055 4.055 18 H 0.029 0.971 19 H 0.069 0.931 20 H 0.015 0.985 21 H 0.267 0.733 22 H 0.369 0.631 23 H 0.055 0.945 24 H 0.105 0.895 25 H 0.108 0.892 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.918 -5.384 -11.380 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.203 3.797 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.798 3.202 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.200 1.200 12 N -0.391 5.391 13 N -0.055 5.055 14 C -0.226 4.226 15 C -0.166 4.166 16 C -0.151 4.151 17 C -0.094 4.094 18 H 0.048 0.952 19 H 0.088 0.912 20 H 0.034 0.966 21 H 0.076 0.924 22 H 0.205 0.795 23 H 0.074 0.926 24 H 0.123 0.877 25 H 0.127 0.873 26 H 0.100 0.900 27 H 0.133 0.867 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.485 -4.228 -10.697 12.019 hybrid contribution 0.267 -1.213 0.990 1.588 sum 3.753 -5.441 -9.707 11.743 Atomic orbital electron populations 1.22013 0.98935 0.98925 0.99509 1.18076 0.90215 0.91381 0.79979 0.98640 1.21547 1.32418 1.13388 0.91276 0.92384 1.25750 0.94860 0.95673 1.01988 1.70036 1.36936 1.23766 1.24636 0.85281 0.78188 0.78399 0.78346 1.19180 1.20399 1.19998 1.48256 1.76667 1.07294 1.06840 1.73211 1.10141 1.27772 0.94403 1.26389 1.01386 0.98664 0.96137 1.22581 1.00479 0.93968 0.99567 1.22510 0.96975 0.96193 0.99382 1.22111 0.99552 0.99817 0.87969 0.95197 0.91228 0.96555 0.92360 0.79489 0.92609 0.87708 0.87325 0.90025 0.86667 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.13 9.29 71.98 0.67 -6.46 15 2 C 0.31 17.12 3.23 44.25 0.14 17.26 15 3 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 15 4 C -0.55 -31.16 8.74 25.60 0.22 -30.93 15 5 H 0.06 3.23 7.79 -2.91 -0.02 3.21 15 6 C 0.02 0.97 5.30 84.65 0.45 1.42 15 7 N -0.92 -53.28 11.32 21.45 0.24 -53.04 15 8 Si 0.97 43.60 29.54 68.60 2.03 45.63 15 9 H -0.27 -11.62 7.11 99.48 0.71 -10.92 15 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 12 N -0.65 -31.91 6.09 -172.51 -1.05 -32.97 15 13 N -0.25 -11.21 11.50 -40.13 -0.46 -11.67 15 14 C -0.03 -1.00 8.47 46.98 0.40 -0.60 15 15 C -0.13 -3.21 7.63 30.06 0.23 -2.98 15 16 C -0.11 -2.12 8.17 30.93 0.25 -1.87 15 17 C -0.05 -1.25 7.95 30.15 0.24 -1.01 15 18 H 0.03 1.49 8.14 -2.39 -0.02 1.47 15 19 H 0.07 3.94 6.07 -2.39 -0.01 3.92 15 20 H 0.02 0.79 8.14 -2.39 -0.02 0.77 15 21 H 0.27 14.54 8.31 -92.70 -0.77 13.77 15 22 H 0.37 16.86 8.34 -213.32 -1.78 15.08 15 23 H 0.06 1.54 8.14 -2.39 -0.02 1.52 15 24 H 0.10 2.33 8.14 -2.39 -0.02 2.31 15 25 H 0.11 1.36 8.14 -2.39 -0.02 1.34 15 26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 15 27 H 0.12 2.10 8.14 -2.39 -0.02 2.08 15 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 Total: -1.00 -65.09 242.33 2.72 -62.37 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -0.64 Total: 14.84 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 2.60 Total: -25.17 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -1.27 Total: -97.67 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -65.09 2.72 -62.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306426548.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.504 kcal (2) G-P(sol) polarization free energy of solvation -65.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds