Wall clock time and date at job start Mon Mar 30 2020 02:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30763 * 1 3 3 Si 1.86793 * 119.99898 * 2 1 4 4 H 1.48501 * 109.47121 * 274.98798 * 3 2 1 5 5 H 1.48496 * 109.47364 * 34.99087 * 3 2 1 6 6 H 1.48497 * 109.47159 * 154.99062 * 3 2 1 7 7 C 1.40055 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99851 * 173.68769 * 7 2 1 9 9 C 1.40989 * 120.00348 * 353.95603 * 7 2 1 10 10 N 1.33764 * 119.87129 * 5.71945 * 9 7 2 11 11 C 1.31504 * 121.53404 * 179.75249 * 10 9 7 12 12 F 1.35100 * 119.43838 * 180.29092 * 11 10 9 13 13 C 1.39318 * 121.11946 * 0.52911 * 11 10 9 14 14 C 1.38498 * 119.63692 * 359.74086 * 13 11 10 15 15 C 1.39046 * 118.56534 * 359.97438 * 14 13 11 16 16 O 1.35612 * 120.55228 * 179.97438 * 15 14 13 17 17 H 0.97001 * 120.00325 * 359.97438 * 1 2 3 18 18 H 1.07997 * 120.18128 * 179.76433 * 13 11 10 19 19 H 1.07998 * 120.72003 * 179.97438 * 14 13 11 20 20 H 0.96693 * 114.00177 * 270.02917 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.3836 2.1072 -1.3948 5 1 1.4958 2.6199 0.8028 6 1 3.5879 1.4120 0.5919 7 6 2.0079 -1.2129 -0.0005 8 1 3.0830 -1.2158 -0.1034 9 6 1.3088 -2.4306 0.1275 10 7 -0.0288 -2.4334 0.1340 11 6 -0.7137 -3.5503 0.2468 12 9 -2.0639 -3.5046 0.2426 13 6 -0.0706 -4.7795 0.3754 14 6 1.3134 -4.8311 0.3797 15 6 2.0235 -3.6423 0.2537 16 8 3.3796 -3.6461 0.2535 17 1 -0.4851 0.8400 0.0004 18 1 -0.6481 -5.6871 0.4708 19 1 1.8300 -5.7744 0.4788 20 1 3.7733 -3.5547 1.1319 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306790005.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:11 Heat of formation + Delta-G solvation = -58.302612 kcal Electronic energy + Delta-G solvation = -10624.260383 eV Core-core repulsion = 8314.793921 eV Total energy + Delta-G solvation = -2309.466462 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.044 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -47.67035 -38.49586 -35.62673 -33.78794 -30.65056 -28.88939 -25.68851 -22.01152 -21.41450 -17.87664 -17.14630 -16.54253 -15.26861 -14.91035 -14.69373 -14.08130 -13.19955 -12.94376 -12.05572 -12.00781 -11.56693 -11.34766 -11.05106 -10.74688 -10.50450 -9.82653 -9.49205 -8.40930 -7.85589 -7.49812 -6.61662 -4.73308 2.42229 2.68408 3.00819 3.03437 3.08040 3.81705 4.48805 5.15703 5.33688 5.65830 5.96745 6.34235 6.49150 6.92099 7.05557 7.18457 7.39551 7.80536 8.04152 8.25953 8.57180 8.93621 9.67407 10.08031 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.044489 B = 0.017098 C = 0.012428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.224717 B = 1637.195436 C = 2252.467162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.061 3.939 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.403 4.403 8 H 0.098 0.902 9 C 0.258 3.742 10 N -0.506 5.506 11 C 0.321 3.679 12 F -0.142 7.142 13 C -0.335 4.335 14 C -0.055 4.055 15 C -0.080 4.080 16 O -0.487 6.487 17 H 0.278 0.722 18 H 0.109 0.891 19 H 0.111 0.889 20 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.536 -0.955 1.804 3.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.166 4.166 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.433 4.433 8 H 0.116 0.884 9 C 0.133 3.867 10 N -0.226 5.226 11 C 0.159 3.841 12 F -0.122 7.122 13 C -0.360 4.360 14 C -0.079 4.079 15 C -0.129 4.129 16 O -0.293 6.293 17 H 0.090 0.910 18 H 0.127 0.873 19 H 0.129 0.871 20 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 1.832 -0.080 1.101 2.139 hybrid contribution 0.458 -0.111 0.611 0.772 sum 2.290 -0.191 1.712 2.866 Atomic orbital electron populations 1.70150 1.07470 1.28601 1.25890 1.26258 0.95003 1.01731 0.93649 0.86160 0.80513 0.80042 0.79338 1.19193 1.19866 1.18161 1.19713 0.95488 0.89011 1.39133 0.88377 1.18509 0.86109 0.92080 0.89969 1.68165 1.08094 1.25311 1.21046 1.18591 0.77705 0.91189 0.96635 1.91450 1.29635 1.97294 1.93780 1.20803 0.94557 0.96343 1.24294 1.21012 0.93150 0.96951 0.96761 1.19319 0.82795 0.93075 1.17708 1.84772 1.16808 1.95622 1.32076 0.91018 0.87325 0.87083 0.79221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.60 11.48 55.55 0.64 -17.97 14 2 C 0.06 1.52 5.49 -17.33 -0.10 1.43 14 3 Si 0.92 18.05 29.56 -169.99 -5.03 13.02 14 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 14 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 14 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 14 7 C -0.40 -10.62 8.93 -37.86 -0.34 -10.96 14 8 H 0.10 2.43 7.34 -52.49 -0.39 2.04 14 9 C 0.26 7.07 6.56 -84.84 -0.56 6.51 14 10 N -0.51 -14.40 7.89 -11.34 -0.09 -14.49 14 11 C 0.32 8.38 8.41 -17.29 -0.15 8.23 14 12 F -0.14 -3.52 17.29 2.25 0.04 -3.48 14 13 C -0.34 -7.77 10.09 -39.08 -0.39 -8.16 14 14 C -0.05 -1.23 10.11 -39.19 -0.40 -1.63 14 15 C -0.08 -1.97 6.77 -38.14 -0.26 -2.23 14 16 O -0.49 -10.63 12.65 -18.53 -0.23 -10.86 14 17 H 0.28 6.63 8.29 -40.82 -0.34 6.29 14 18 H 0.11 2.20 8.06 -52.49 -0.42 1.78 14 19 H 0.11 2.13 8.06 -52.49 -0.42 1.71 14 20 H 0.36 6.06 9.06 45.56 0.41 6.48 14 LS Contribution 197.35 15.07 2.97 2.97 Total: -1.00 -29.70 197.35 -3.83 -33.54 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 0.05 Total: 4.08 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.18 Total: -6.81 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.55 Total: -32.46 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.23 Total: -10.86 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.04 Total: -3.48 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 2.97 Total: 2.97 kcal Total: -29.70 -3.83 -33.54 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306790005.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.768 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds