Wall clock time and date at job start Mon Mar 30 2020 02:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30763 * 1 3 3 Si 1.86793 * 119.99898 * 2 1 4 4 H 1.48501 * 109.47121 * 274.98798 * 3 2 1 5 5 H 1.48496 * 109.47364 * 34.99087 * 3 2 1 6 6 H 1.48497 * 109.47159 * 154.99062 * 3 2 1 7 7 C 1.40055 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99851 * 173.68769 * 7 2 1 9 9 C 1.40989 * 120.00348 * 353.95603 * 7 2 1 10 10 N 1.33764 * 119.87129 * 5.71945 * 9 7 2 11 11 C 1.31504 * 121.53404 * 179.75249 * 10 9 7 12 12 F 1.35100 * 119.43838 * 180.29092 * 11 10 9 13 13 C 1.39318 * 121.11946 * 0.52911 * 11 10 9 14 14 C 1.38498 * 119.63692 * 359.74086 * 13 11 10 15 15 C 1.39046 * 118.56534 * 359.97438 * 14 13 11 16 16 O 1.35612 * 120.55228 * 179.97438 * 15 14 13 17 17 H 0.97001 * 120.00325 * 359.97438 * 1 2 3 18 18 H 1.07997 * 120.18128 * 179.76433 * 13 11 10 19 19 H 1.07998 * 120.72003 * 179.97438 * 14 13 11 20 20 H 0.96693 * 114.00177 * 270.02917 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.3836 2.1072 -1.3948 5 1 1.4958 2.6199 0.8028 6 1 3.5879 1.4120 0.5919 7 6 2.0079 -1.2129 -0.0005 8 1 3.0830 -1.2158 -0.1034 9 6 1.3088 -2.4306 0.1275 10 7 -0.0288 -2.4334 0.1340 11 6 -0.7137 -3.5503 0.2468 12 9 -2.0639 -3.5046 0.2426 13 6 -0.0706 -4.7795 0.3754 14 6 1.3134 -4.8311 0.3797 15 6 2.0235 -3.6423 0.2537 16 8 3.3796 -3.6461 0.2535 17 1 -0.4851 0.8400 0.0004 18 1 -0.6481 -5.6871 0.4708 19 1 1.8300 -5.7744 0.4788 20 1 3.7733 -3.5547 1.1319 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306790005.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:11 Heat of formation + Delta-G solvation = -79.889584 kcal Electronic energy + Delta-G solvation = -10625.196465 eV Core-core repulsion = 8314.793921 eV Total energy + Delta-G solvation = -2310.402543 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.044 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -49.61946 -40.37637 -37.43502 -35.65358 -32.54176 -30.80826 -27.59481 -23.90848 -23.31818 -19.76984 -18.92401 -18.48044 -17.17929 -16.66809 -16.62934 -15.87342 -14.97352 -14.75179 -13.87150 -13.83631 -13.35704 -13.08318 -12.76714 -12.65464 -12.06588 -11.62751 -11.28613 -10.30448 -9.76698 -9.43061 -8.46210 -6.68021 0.52025 0.84828 1.39970 1.49784 1.57300 2.17920 2.63128 3.24656 3.49680 3.80383 4.21720 4.58857 4.63502 5.06992 5.23425 5.34592 5.54035 5.92849 6.10908 6.43652 6.67488 7.22877 7.73953 8.27881 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.044489 B = 0.017098 C = 0.012428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.224717 B = 1637.195436 C = 2252.467162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.016 3.984 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.247 1.247 7 C -0.434 4.434 8 H 0.106 0.894 9 C 0.222 3.778 10 N -0.545 5.545 11 C 0.290 3.710 12 F -0.144 7.144 13 C -0.321 4.321 14 C -0.052 4.052 15 C -0.083 4.083 16 O -0.490 6.490 17 H 0.285 0.715 18 H 0.142 0.858 19 H 0.153 0.847 20 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.799 -1.331 2.071 4.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.207 4.207 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.170 1.170 7 C -0.464 4.464 8 H 0.124 0.876 9 C 0.098 3.902 10 N -0.267 5.267 11 C 0.129 3.871 12 F -0.123 7.123 13 C -0.345 4.345 14 C -0.075 4.075 15 C -0.132 4.132 16 O -0.298 6.298 17 H 0.095 0.905 18 H 0.160 0.840 19 H 0.171 0.829 20 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.091 -0.491 1.381 3.421 hybrid contribution 0.083 -0.130 0.542 0.563 sum 3.174 -0.621 1.923 3.762 Atomic orbital electron populations 1.70250 1.09423 1.29991 1.27273 1.27276 0.95718 1.05384 0.92302 0.84950 0.79186 0.74658 0.79495 1.18677 1.19172 1.17022 1.20067 0.96010 0.89830 1.40539 0.87618 1.19022 0.86305 0.93893 0.91011 1.68039 1.09103 1.27038 1.22486 1.19002 0.77921 0.92090 0.98058 1.91435 1.29617 1.97347 1.93926 1.21159 0.95217 0.96297 1.21858 1.21407 0.92892 0.97944 0.95290 1.19420 0.83848 0.92976 1.16967 1.84678 1.15421 1.95488 1.34177 0.90451 0.84009 0.82913 0.76455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.62 11.48 21.84 0.25 -40.37 14 2 C 0.02 0.81 5.49 85.29 0.47 1.28 14 3 Si 1.00 36.77 29.56 68.60 2.03 38.80 14 4 H -0.26 -9.37 7.11 99.48 0.71 -8.66 14 5 H -0.27 -9.44 7.11 99.48 0.71 -8.74 14 6 H -0.25 -8.55 7.11 99.48 0.71 -7.85 14 7 C -0.43 -23.01 8.93 23.39 0.21 -22.81 14 8 H 0.11 5.20 7.34 -2.91 -0.02 5.18 14 9 C 0.22 12.27 6.56 40.26 0.26 12.54 14 10 N -0.55 -31.61 7.89 -189.78 -1.50 -33.11 14 11 C 0.29 15.13 8.41 85.00 0.71 15.85 14 12 F -0.14 -7.18 17.29 44.97 0.78 -6.40 14 13 C -0.32 -14.17 10.09 22.59 0.23 -13.95 14 14 C -0.05 -2.18 10.11 22.53 0.23 -1.95 14 15 C -0.08 -3.97 6.77 23.20 0.16 -3.81 14 16 O -0.49 -20.26 12.65 -89.23 -1.13 -21.39 14 17 H 0.28 13.87 8.29 -92.71 -0.77 13.10 14 18 H 0.14 5.24 8.06 -2.91 -0.02 5.22 14 19 H 0.15 5.13 8.06 -2.91 -0.02 5.11 14 20 H 0.38 11.98 9.06 -74.06 -0.67 11.31 14 Total: -1.00 -63.97 197.35 3.31 -60.66 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.61 Total: 14.67 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 2.27 Total: -12.85 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -1.25 Total: -73.48 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -1.13 Total: -21.39 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.78 Total: -6.40 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Total: -63.97 3.31 -60.66 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306790005.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.233 kcal (2) G-P(sol) polarization free energy of solvation -63.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds