Wall clock time and date at job start Mon Mar 30 2020 02:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86794 * 120.00471 * 2 1 4 4 H 1.48511 * 109.47064 * 270.00155 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99734 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99970 * 3 2 1 7 7 C 1.40050 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.41054 * 119.99868 * 0.28242 * 7 2 1 10 10 N 1.33755 * 119.88363 * 359.44344 * 9 7 2 11 11 C 1.31363 * 121.62569 * 179.71145 * 10 9 7 12 12 C 1.38876 * 121.21064 * 0.57342 * 11 10 9 13 13 C 1.38791 * 119.63502 * 359.72030 * 12 11 10 14 14 F 1.35095 * 120.75563 * 179.97438 * 13 12 11 15 15 C 1.39280 * 118.48915 * 359.97438 * 13 12 11 16 16 O 1.35634 * 120.59736 * 179.97438 * 15 13 12 17 17 H 0.97005 * 119.99645 * 0.02562 * 1 2 3 18 18 H 1.07992 * 119.39039 * 180.31213 * 11 10 9 19 19 H 1.07997 * 120.18169 * 179.69747 * 12 11 10 20 20 H 0.96694 * 114.00311 * 270.02394 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2417 1.6176 0.0000 4 1 2.4893 2.0463 -1.4002 5 1 1.4392 2.6526 0.7000 6 1 3.5393 1.4401 0.7000 7 6 2.0078 -1.2129 0.0005 8 1 3.0879 -1.2129 0.0001 9 6 1.3025 -2.4344 -0.0049 10 7 -0.0350 -2.4317 0.0006 11 6 -0.7262 -3.5487 -0.0098 12 6 -0.0948 -4.7856 -0.0153 13 6 1.2917 -4.8484 -0.0155 14 9 1.9293 -6.0394 -0.0202 15 6 2.0107 -3.6556 -0.0108 16 8 3.3670 -3.6670 -0.0103 17 1 -0.4850 0.8401 -0.0004 18 1 -1.8052 -3.5043 -0.0100 19 1 -0.6795 -5.6936 -0.0189 20 1 3.7600 -3.6740 0.8732 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306799473.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:42 Heat of formation + Delta-G solvation = -62.386202 kcal Electronic energy + Delta-G solvation = -10631.061472 eV Core-core repulsion = 8321.417932 eV Total energy + Delta-G solvation = -2309.643540 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.044 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.90110 -38.39569 -35.75489 -33.77783 -30.13142 -29.06163 -25.83307 -21.81393 -21.59896 -17.93554 -17.19274 -16.25281 -15.50644 -14.91543 -14.79812 -13.82773 -13.35196 -12.92293 -12.78740 -11.88828 -11.54209 -11.31079 -11.20823 -10.71594 -10.51919 -9.53979 -9.51334 -8.04710 -7.83529 -7.67642 -6.62652 -4.73151 2.46388 2.59872 3.00328 3.03805 3.07677 3.81322 4.52749 5.26214 5.40745 5.68955 5.98194 6.28127 6.53102 6.89194 7.01370 7.19648 7.25500 7.77062 8.06888 8.23925 8.58446 8.92567 9.85215 10.08101 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.063494 B = 0.014512 C = 0.011874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.883319 B = 1929.038935 C = 2357.528729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.063 3.937 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.402 4.402 8 H 0.094 0.906 9 C 0.248 3.752 10 N -0.479 5.479 11 C 0.148 3.852 12 C -0.350 4.350 13 C 0.132 3.868 14 F -0.155 7.155 15 C -0.106 4.106 16 O -0.481 6.481 17 H 0.278 0.722 18 H 0.132 0.868 19 H 0.108 0.892 20 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 -0.240 1.502 1.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.164 4.164 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.431 4.431 8 H 0.112 0.888 9 C 0.125 3.875 10 N -0.193 5.193 11 C -0.020 4.020 12 C -0.374 4.374 13 C 0.106 3.894 14 F -0.134 7.134 15 C -0.156 4.156 16 O -0.286 6.286 17 H 0.089 0.911 18 H 0.149 0.851 19 H 0.127 0.873 20 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 0.369 0.699 0.889 1.190 hybrid contribution 0.877 -0.512 0.507 1.135 sum 1.246 0.188 1.396 1.881 Atomic orbital electron populations 1.70140 1.07396 1.28483 1.26249 1.26210 0.95038 1.01588 0.93560 0.86175 0.80405 0.79925 0.79536 1.19112 1.19899 1.18274 1.19677 0.95068 0.88953 1.39415 0.88782 1.18800 0.88214 0.91054 0.89460 1.68832 1.06314 1.26457 1.17736 1.22484 0.99228 0.87658 0.92623 1.21281 0.91841 0.99691 1.24606 1.18313 0.90971 0.79325 1.00749 1.91345 1.82727 1.45266 1.94050 1.19440 0.83102 0.91552 1.21530 1.84807 1.16362 1.96213 1.31182 0.91102 0.85073 0.87343 0.79383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.96 11.46 55.55 0.64 -17.32 14 2 C 0.06 1.55 5.50 -17.33 -0.10 1.46 14 3 Si 0.92 17.92 29.56 -169.99 -5.02 12.89 14 4 H -0.27 -5.18 7.11 56.52 0.40 -4.77 14 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 14 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 14 7 C -0.40 -10.58 8.95 -37.84 -0.34 -10.92 14 8 H 0.09 2.36 7.32 -52.49 -0.38 1.97 14 9 C 0.25 6.80 6.56 -84.85 -0.56 6.24 14 10 N -0.48 -12.95 7.86 -11.03 -0.09 -13.04 14 11 C 0.15 3.51 11.17 -17.52 -0.20 3.32 14 12 C -0.35 -8.05 10.10 -39.14 -0.40 -8.45 14 13 C 0.13 3.24 7.39 -38.99 -0.29 2.95 14 14 F -0.15 -3.61 17.18 2.25 0.04 -3.57 14 15 C -0.11 -2.74 6.77 -38.08 -0.26 -3.00 14 16 O -0.48 -11.33 12.55 -18.60 -0.23 -11.56 14 17 H 0.28 6.34 8.29 -40.82 -0.34 6.00 14 18 H 0.13 2.64 8.06 -52.49 -0.42 2.22 14 19 H 0.11 2.19 8.06 -52.49 -0.42 1.76 14 20 H 0.35 6.68 9.06 45.56 0.41 7.10 14 LS Contribution 197.16 15.07 2.97 2.97 Total: -1.00 -29.32 197.16 -3.78 -33.10 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 0.05 Total: 4.92 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.13 Total: -8.39 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.55 Total: -30.36 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.23 Total: -11.56 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.04 Total: -3.57 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.02 Total: 12.89 kcal Total LS contribution 2.97 Total: 2.97 kcal Total: -29.32 -3.78 -33.10 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306799473.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.286 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds