Wall clock time and date at job start Mon Mar 30 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30787 * 1 3 3 Si 1.86797 * 120.00075 * 2 1 4 4 H 1.48504 * 109.46795 * 274.98487 * 3 2 1 5 5 H 1.48499 * 109.47163 * 34.98091 * 3 2 1 6 6 H 1.48494 * 109.47194 * 154.98481 * 3 2 1 7 7 C 1.40030 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99676 * 186.27686 * 7 2 1 9 9 C 1.40969 * 120.00364 * 6.27815 * 7 2 1 10 10 N 1.33702 * 119.85741 * 353.58928 * 9 7 2 11 11 C 1.31306 * 121.59017 * 179.97438 * 10 9 7 12 12 C 1.39278 * 121.13471 * 0.02562 * 11 10 9 13 13 F 1.35100 * 120.20873 * 180.02562 * 12 11 10 14 14 C 1.38881 * 119.59276 * 359.97438 * 12 11 10 15 15 C 1.38823 * 118.52156 * 0.02562 * 14 12 11 16 16 O 1.35595 * 120.56037 * 180.02562 * 15 14 12 17 17 H 0.97003 * 119.99884 * 0.02562 * 1 2 3 18 18 H 1.08001 * 119.43016 * 180.27719 * 11 10 9 19 19 H 1.08006 * 120.73273 * 179.97438 * 14 12 11 20 20 H 0.96697 * 114.00397 * 89.99871 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.3840 2.1072 -1.3948 5 1 1.4959 2.6200 0.8027 6 1 3.5881 1.4120 0.5920 7 6 2.0080 -1.2127 0.0005 8 1 3.0832 -1.2155 0.1028 9 6 1.3095 -2.4300 -0.1324 10 7 -0.0275 -2.4339 -0.1298 11 6 -0.7123 -3.5476 -0.2518 12 6 -0.0707 -4.7761 -0.3891 13 9 -0.7938 -5.9105 -0.5139 14 6 1.3171 -4.8279 -0.3981 15 6 2.0255 -3.6411 -0.2680 16 8 3.3815 -3.6436 -0.2719 17 1 -0.4850 0.8401 -0.0004 18 1 -1.7917 -3.5098 -0.2497 19 1 1.8336 -5.7706 -0.5031 20 1 3.7725 -3.5467 -1.1510 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306907267.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:13 Heat of formation + Delta-G solvation = -83.109481 kcal Electronic energy + Delta-G solvation = -10557.122515 eV Core-core repulsion = 8246.580346 eV Total energy + Delta-G solvation = -2310.542168 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.044 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.33878 -40.40183 -37.55418 -35.59647 -32.09983 -31.14431 -27.42553 -24.09292 -23.25280 -19.64369 -19.20903 -18.02674 -17.11574 -16.91059 -16.24146 -16.00154 -15.15764 -14.64586 -14.36881 -13.66901 -13.29721 -13.06013 -12.82481 -12.60962 -12.06476 -11.47707 -11.22994 -10.21464 -9.77891 -9.49706 -8.47474 -6.59599 0.53862 0.74048 1.42253 1.50775 1.57879 2.19787 2.64943 3.44251 3.65774 3.95495 4.10015 4.17857 4.65862 4.99133 5.10979 5.28599 5.42207 5.94439 6.15046 6.42425 6.70323 7.17061 7.86715 8.29304 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.062871 B = 0.013937 C = 0.011477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.248700 B = 2008.488069 C = 2439.075992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.019 3.981 3 Si 0.996 3.004 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.254 1.254 7 C -0.431 4.431 8 H 0.100 0.900 9 C 0.191 3.809 10 N -0.486 5.486 11 C 0.098 3.902 12 C -0.117 4.117 13 F -0.161 7.161 14 C -0.107 4.107 15 C -0.051 4.051 16 O -0.490 6.490 17 H 0.287 0.713 18 H 0.152 0.848 19 H 0.139 0.861 20 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 0.321 -1.931 3.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.204 4.204 3 Si 0.815 3.185 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.177 1.177 7 C -0.461 4.461 8 H 0.118 0.882 9 C 0.067 3.933 10 N -0.200 5.200 11 C -0.069 4.069 12 C -0.141 4.141 13 F -0.140 7.140 14 C -0.131 4.131 15 C -0.101 4.101 16 O -0.298 6.298 17 H 0.098 0.902 18 H 0.170 0.830 19 H 0.157 0.843 20 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.182 1.156 -1.223 2.755 hybrid contribution 0.435 -0.602 -0.616 0.965 sum 2.617 0.554 -1.839 3.246 Atomic orbital electron populations 1.70199 1.09123 1.30111 1.26999 1.27168 0.95799 1.05001 0.92446 0.84979 0.79012 0.74931 0.79555 1.18417 1.19097 1.17729 1.20013 0.95949 0.89983 1.40173 0.88179 1.19477 0.88749 0.93275 0.91790 1.68857 1.07393 1.25653 1.18125 1.23164 1.00802 0.87235 0.95744 1.18387 0.89681 0.83051 1.22982 1.91298 1.77773 1.49551 1.95395 1.21467 0.92480 0.98904 1.00276 1.19195 0.83729 0.92143 1.14999 1.84668 1.15458 1.95375 1.34328 0.90239 0.83044 0.84284 0.76166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.21 11.49 21.84 0.25 -37.96 14 2 C 0.02 0.94 5.49 85.28 0.47 1.41 14 3 Si 1.00 35.76 29.56 68.60 2.03 37.79 14 4 H -0.26 -8.93 7.11 99.48 0.71 -8.22 14 5 H -0.27 -9.16 7.11 99.48 0.71 -8.46 14 6 H -0.25 -8.83 7.11 99.48 0.71 -8.12 14 7 C -0.43 -22.41 8.93 23.37 0.21 -22.20 14 8 H 0.10 4.90 7.34 -2.91 -0.02 4.88 14 9 C 0.19 10.35 6.56 40.29 0.26 10.61 14 10 N -0.49 -26.67 7.88 -188.49 -1.48 -28.15 14 11 C 0.10 4.79 11.17 85.02 0.95 5.74 14 12 C -0.12 -5.44 7.36 22.67 0.17 -5.27 14 13 F -0.16 -6.97 17.28 44.97 0.78 -6.20 14 14 C -0.11 -4.84 10.10 22.56 0.23 -4.61 14 15 C -0.05 -2.48 6.76 23.18 0.16 -2.33 14 16 O -0.49 -20.72 12.65 -89.04 -1.13 -21.85 14 17 H 0.29 13.13 8.30 -92.71 -0.77 12.36 14 18 H 0.15 6.55 8.06 -2.91 -0.02 6.53 14 19 H 0.14 5.45 8.06 -2.91 -0.02 5.43 14 20 H 0.38 12.33 9.06 -74.06 -0.67 11.65 14 Total: -1.00 -60.48 197.34 3.50 -56.98 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.61 Total: 16.05 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 2.44 Total: -16.66 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -1.23 Total: -66.12 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -1.13 Total: -21.85 kcal Atomic # 9 Polarization: -6.97 SS G_CDS: 0.78 Total: -6.20 kcal Atomic # 14 Polarization: 35.76 SS G_CDS: 2.03 Total: 37.79 kcal Total: -60.48 3.50 -56.98 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306907267.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.133 kcal (2) G-P(sol) polarization free energy of solvation -60.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds