Wall clock time and date at job start Mon Mar 30 2020 02:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31368 * 1 3 3 Si 1.86803 * 120.00132 * 2 1 4 4 H 1.48494 * 109.47398 * 270.00681 * 3 2 1 5 5 H 1.48499 * 109.46831 * 30.00817 * 3 2 1 6 6 H 1.48497 * 109.47010 * 150.00361 * 3 2 1 7 7 C 1.38889 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99951 * 359.97438 * 7 2 1 9 9 O 1.34784 * 120.00187 * 179.97438 * 7 2 1 10 10 C 1.34771 * 117.00448 * 179.97438 * 9 7 2 11 11 O 1.21563 * 119.99569 * 0.02562 * 10 9 7 12 12 C 1.47250 * 120.00504 * 180.27787 * 10 9 7 13 13 C 1.36987 * 126.96014 * 179.43742 * 12 10 9 14 14 C 1.41210 * 103.83439 * 179.87341 * 13 12 10 15 15 N 1.30152 * 106.61182 * 0.39666 * 14 13 12 16 16 O 1.20891 * 112.01334 * 359.73699 * 15 14 13 17 17 H 0.96993 * 119.99743 * 359.97438 * 1 2 3 18 18 H 1.07994 * 128.08274 * 0.02562 * 13 12 10 19 19 H 1.07997 * 126.68972 * 180.13220 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4951 2.0465 -1.4000 5 1 1.4452 2.6526 0.7002 6 1 3.5453 1.4401 0.7000 7 6 2.0082 -1.2028 -0.0005 8 1 1.4682 -2.1381 -0.0005 9 8 3.3560 -1.2028 -0.0011 10 6 3.9679 -2.4036 -0.0010 11 8 3.3058 -3.4231 -0.0010 12 6 5.4384 -2.4807 0.0046 13 6 6.2036 -3.6169 0.0161 14 6 7.5295 -3.1311 0.0138 15 7 7.4498 -1.8320 0.0106 16 8 6.3033 -1.4484 0.0053 17 1 -0.4849 0.8400 0.0004 18 1 5.8706 -4.6442 0.0226 19 1 8.4333 -3.7222 0.0186 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306969231.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:02 Heat of formation + Delta-G solvation = -30.865012 kcal Electronic energy + Delta-G solvation = -10535.018135 eV Core-core repulsion = 8214.368667 eV Total energy + Delta-G solvation = -2320.649468 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.036 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -45.98708 -41.25609 -37.71956 -34.95834 -34.63544 -33.04386 -28.19876 -25.19573 -24.43375 -22.17227 -20.33393 -19.84652 -18.76497 -17.75072 -16.82089 -16.74451 -16.10763 -15.25105 -14.51109 -14.47795 -14.24620 -13.49141 -12.82517 -12.52468 -12.37518 -11.93686 -11.63810 -11.60946 -10.94943 -10.84166 -8.65219 -6.50186 -0.40218 1.09189 1.29834 1.35748 1.44257 1.57391 1.75210 2.22953 2.39808 2.84663 3.28112 3.77025 4.00546 4.17787 4.62456 4.97852 5.30314 5.75134 6.23223 6.66858 6.92859 7.35198 8.45859 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.064898 B = 0.012985 C = 0.010862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.343546 B = 2155.741470 C = 2577.236329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.028 3.972 3 Si 0.974 3.026 4 H -0.257 1.257 5 H -0.257 1.257 6 H -0.255 1.255 7 C -0.409 4.409 8 H 0.073 0.927 9 O -0.237 6.237 10 C 0.486 3.514 11 O -0.539 6.539 12 C -0.059 4.059 13 C -0.143 4.143 14 C 0.017 3.983 15 N -0.369 5.369 16 O 0.091 5.909 17 H 0.295 0.705 18 H 0.208 0.792 19 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.397 -2.346 0.043 13.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.175 4.175 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.182 1.182 6 H -0.179 1.179 7 C -0.484 4.484 8 H 0.090 0.910 9 O -0.145 6.145 10 C 0.333 3.667 11 O -0.435 6.435 12 C -0.123 4.123 13 C -0.164 4.164 14 C -0.161 4.161 15 N -0.075 5.075 16 O 0.023 5.977 17 H 0.105 0.895 18 H 0.225 0.775 19 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 13.875 -1.491 0.047 13.955 hybrid contribution -0.798 -0.391 -0.016 0.889 sum 13.076 -1.882 0.031 13.211 Atomic orbital electron populations 1.69625 1.07379 1.30800 1.45612 1.25507 0.95913 1.02491 0.93622 0.85209 0.79096 0.76208 0.80180 1.18167 1.18150 1.17916 1.20485 0.76669 0.96543 1.54734 0.90956 1.83577 1.23075 1.31405 1.76398 1.19266 0.85655 0.82504 0.79302 1.90751 1.64936 1.36476 1.51321 1.23006 0.89371 0.89362 1.10557 1.23416 0.91404 1.00463 1.01123 1.25834 1.00133 0.89688 1.00402 1.73792 0.98276 1.17464 1.17955 1.85078 1.10906 1.33573 1.68102 0.89452 0.77477 0.73235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.25 13.95 21.65 0.30 -51.95 13 2 C 0.03 1.58 5.50 84.92 0.47 2.04 13 3 Si 0.97 43.16 28.62 68.60 1.96 45.13 13 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 13 5 H -0.26 -10.44 7.11 99.48 0.71 -9.74 13 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 13 7 C -0.41 -24.68 10.11 67.98 0.69 -23.99 13 8 H 0.07 4.85 7.09 -2.91 -0.02 4.83 13 9 O -0.24 -12.86 8.58 12.38 0.11 -12.75 13 10 C 0.49 23.60 7.89 70.19 0.55 24.15 13 11 O -0.54 -28.57 16.16 19.63 0.32 -28.26 13 12 C -0.06 -2.21 7.37 24.35 0.18 -2.03 13 13 C -0.14 -3.83 10.96 22.71 0.25 -3.58 13 14 C 0.02 0.37 12.15 85.67 1.04 1.41 13 15 N -0.37 -11.15 12.04 -58.46 -0.70 -11.85 13 16 O 0.09 3.30 11.23 65.46 0.74 4.03 13 17 H 0.30 15.39 8.31 -92.71 -0.77 14.62 13 18 H 0.21 4.42 8.06 -2.91 -0.02 4.39 13 19 H 0.25 2.50 8.06 -2.91 -0.02 2.47 13 Total: -1.00 -68.96 197.40 7.18 -61.78 By element: Atomic # 1 Polarization: -5.41 SS G_CDS: 1.28 Total: -4.13 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 3.18 Total: -2.00 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: -0.40 Total: -63.80 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: 1.16 Total: -36.97 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.96 Total: 45.13 kcal Total: -68.96 7.18 -61.78 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306969231.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.915 kcal (2) G-P(sol) polarization free energy of solvation -68.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds