Wall clock time and date at job start Mon Mar 30 2020 02:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48499 * 109.46954 * 239.99800 * 3 2 1 5 5 H 1.48496 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46640 * 119.99999 * 3 2 1 7 7 C 1.39934 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99427 * 197.58456 * 7 2 1 9 9 C 1.41212 * 120.00380 * 17.58044 * 7 2 1 10 10 C 1.40708 * 120.70351 * 24.17986 * 9 7 2 11 11 N 1.31432 * 120.49281 * 179.97438 * 10 9 7 12 12 C 1.32254 * 122.17975 * 0.02562 * 11 10 9 13 13 C 1.38323 * 121.38155 * 359.97438 * 12 11 10 14 14 F 1.35093 * 120.34155 * 179.97438 * 13 12 11 15 15 C 1.39077 * 119.31030 * 0.02562 * 13 12 11 16 16 O 1.35582 * 120.97920 * 180.02562 * 15 13 12 17 17 H 0.97002 * 119.99876 * 359.97438 * 1 2 3 18 18 H 1.08000 * 119.74832 * 359.96042 * 10 9 7 19 19 H 1.07993 * 119.30721 * 180.02562 * 12 11 10 20 20 H 0.96705 * 114.00242 * 269.97775 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2777 2.7464 -0.0006 6 1 3.0964 1.6963 1.2126 7 6 2.0083 -1.2119 -0.0005 8 1 3.0505 -1.2338 0.2820 9 6 1.3517 -2.4061 -0.3704 10 6 0.2138 -2.3739 -1.1975 11 7 -0.3938 -3.4880 -1.5396 12 6 0.0261 -4.6735 -1.1306 13 6 1.1360 -4.8027 -0.3153 14 9 1.5463 -6.0241 0.0905 15 6 1.8246 -3.6619 0.0831 16 8 2.9170 -3.7492 0.8814 17 1 -0.4850 0.8401 0.0004 18 1 -0.1632 -1.4265 -1.5535 19 1 -0.5083 -5.5594 -1.4404 20 1 2.7173 -3.7117 1.8269 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307472391.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:44 Heat of formation + Delta-G solvation = -73.068289 kcal Electronic energy + Delta-G solvation = -10626.603107 eV Core-core repulsion = 8316.496357 eV Total energy + Delta-G solvation = -2310.106750 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.044 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.87050 -38.53999 -35.97422 -34.18716 -30.14317 -29.14562 -25.80666 -21.86347 -21.73350 -17.91539 -17.37678 -16.28698 -15.51565 -15.11502 -14.93972 -14.23686 -13.20641 -13.11413 -12.37269 -12.00815 -11.81685 -11.61203 -11.38459 -10.97617 -10.63845 -9.59939 -9.42716 -8.29843 -8.10483 -7.66346 -7.14725 -4.72262 2.38390 2.42748 2.92231 2.94745 3.03237 3.70049 4.34305 5.11197 5.37703 5.54227 5.93926 6.38209 6.43532 6.81281 7.03437 7.06452 7.42310 7.78250 8.07456 8.27537 8.43085 8.78369 9.43748 9.80204 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.063226 B = 0.014300 C = 0.012034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.750103 B = 1957.604837 C = 2326.108892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.072 3.928 3 Si 0.923 3.077 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.426 4.426 8 H 0.092 0.908 9 C 0.062 3.938 10 C 0.049 3.951 11 N -0.457 5.457 12 C -0.070 4.070 13 C 0.054 3.946 14 F -0.155 7.155 15 C -0.037 4.037 16 O -0.481 6.481 17 H 0.291 0.709 18 H 0.160 0.840 19 H 0.132 0.868 20 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.491 0.985 1.251 2.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.149 4.149 3 Si 0.746 3.254 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.455 4.455 8 H 0.110 0.890 9 C 0.056 3.944 10 C -0.118 4.118 11 N -0.165 5.165 12 C -0.222 4.222 13 C 0.032 3.968 14 F -0.134 7.134 15 C -0.089 4.089 16 O -0.288 6.288 17 H 0.102 0.898 18 H 0.177 0.823 19 H 0.150 0.850 20 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.866 1.016 0.215 1.352 hybrid contribution 0.869 0.448 1.225 1.567 sum 1.735 1.463 1.439 2.688 Atomic orbital electron populations 1.69768 1.07827 1.30690 1.31754 1.26137 0.94914 1.02164 0.91725 0.86102 0.80012 0.78807 0.80465 1.18336 1.19929 1.18607 1.19559 0.98547 0.90217 1.37178 0.88981 1.18789 0.92578 0.91748 0.91234 1.23079 0.95810 0.95348 0.97559 1.67179 1.30108 0.98100 1.21084 1.21666 0.98231 0.96041 1.06302 1.19129 0.96942 0.79191 1.01491 1.91335 1.90310 1.42212 1.89534 1.18649 0.94982 0.91289 1.03991 1.84738 1.29385 1.95514 1.19135 0.89755 0.82327 0.85031 0.78483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.42 10.95 55.55 0.61 -17.81 14 2 C 0.07 1.65 5.16 -17.33 -0.09 1.56 14 3 Si 0.92 17.17 29.60 -169.99 -5.03 12.14 14 4 H -0.26 -4.83 7.11 56.52 0.40 -4.43 14 5 H -0.27 -4.93 7.11 56.52 0.40 -4.53 14 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 14 7 C -0.43 -10.67 8.78 -37.82 -0.33 -11.01 14 8 H 0.09 2.26 7.71 -52.49 -0.40 1.85 14 9 C 0.06 1.63 5.60 -106.54 -0.60 1.03 14 10 C 0.05 1.28 9.90 -16.79 -0.17 1.11 14 11 N -0.46 -11.64 10.33 -12.60 -0.13 -11.77 14 12 C -0.07 -1.69 11.14 -17.34 -0.19 -1.88 14 13 C 0.05 1.33 7.34 -39.24 -0.29 1.04 14 14 F -0.15 -3.55 17.17 2.25 0.04 -3.52 14 15 C -0.04 -0.93 6.81 -37.97 -0.26 -1.19 14 16 O -0.48 -11.09 12.83 -18.44 -0.24 -11.33 14 17 H 0.29 6.19 8.30 -40.82 -0.34 5.86 14 18 H 0.16 4.10 6.14 -52.49 -0.32 3.78 14 19 H 0.13 2.78 8.06 -52.49 -0.42 2.36 14 20 H 0.36 6.75 9.06 45.56 0.41 7.17 14 LS Contribution 196.18 15.07 2.96 2.96 Total: -1.00 -27.44 196.18 -3.59 -31.03 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.13 Total: 7.63 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -1.92 Total: -9.33 kcal Atomic # 7 Polarization: -30.06 SS G_CDS: 0.48 Total: -29.58 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.24 Total: -11.33 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.04 Total: -3.52 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 2.96 Total: 2.96 kcal Total: -27.44 -3.59 -31.03 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307472391.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.042 kcal (2) G-P(sol) polarization free energy of solvation -27.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds