Wall clock time and date at job start Mon Mar 30 2020 02:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48499 * 109.46954 * 239.99800 * 3 2 1 5 5 H 1.48496 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46640 * 119.99999 * 3 2 1 7 7 C 1.39934 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99427 * 197.58456 * 7 2 1 9 9 C 1.41212 * 120.00380 * 17.58044 * 7 2 1 10 10 C 1.40708 * 120.70351 * 24.17986 * 9 7 2 11 11 N 1.31432 * 120.49281 * 179.97438 * 10 9 7 12 12 C 1.32254 * 122.17975 * 0.02562 * 11 10 9 13 13 C 1.38323 * 121.38155 * 359.97438 * 12 11 10 14 14 F 1.35093 * 120.34155 * 179.97438 * 13 12 11 15 15 C 1.39077 * 119.31030 * 0.02562 * 13 12 11 16 16 O 1.35582 * 120.97920 * 180.02562 * 15 13 12 17 17 H 0.97002 * 119.99876 * 359.97438 * 1 2 3 18 18 H 1.08000 * 119.74832 * 359.96042 * 10 9 7 19 19 H 1.07993 * 119.30721 * 180.02562 * 12 11 10 20 20 H 0.96705 * 114.00242 * 269.97775 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2777 2.7464 -0.0006 6 1 3.0964 1.6963 1.2126 7 6 2.0083 -1.2119 -0.0005 8 1 3.0505 -1.2338 0.2820 9 6 1.3517 -2.4061 -0.3704 10 6 0.2138 -2.3739 -1.1975 11 7 -0.3938 -3.4880 -1.5396 12 6 0.0261 -4.6735 -1.1306 13 6 1.1360 -4.8027 -0.3153 14 9 1.5463 -6.0241 0.0905 15 6 1.8246 -3.6619 0.0831 16 8 2.9170 -3.7492 0.8814 17 1 -0.4850 0.8401 0.0004 18 1 -0.1632 -1.4265 -1.5535 19 1 -0.5083 -5.5594 -1.4404 20 1 2.7173 -3.7117 1.8269 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307472391.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:44 Heat of formation + Delta-G solvation = -92.328281 kcal Electronic energy + Delta-G solvation = -10627.438283 eV Core-core repulsion = 8316.496357 eV Total energy + Delta-G solvation = -2310.941925 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.044 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.73818 -40.44081 -37.83645 -36.01582 -32.04029 -31.05741 -27.69544 -23.79595 -23.61886 -19.78306 -19.23985 -18.17284 -17.40026 -16.94868 -16.67519 -16.10353 -14.98220 -14.85621 -14.26050 -13.85583 -13.67877 -13.39911 -13.07360 -12.72882 -12.09161 -11.36628 -11.24269 -10.24449 -10.02513 -9.58616 -8.90946 -6.62466 0.45035 0.57506 1.40477 1.51710 1.55703 2.15057 2.53581 3.25430 3.45384 3.67094 4.08013 4.47195 4.54672 4.99217 5.12467 5.20082 5.52893 5.88487 6.17571 6.40239 6.56846 7.00903 7.49236 8.07016 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.063226 B = 0.014300 C = 0.012034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.750103 B = 1957.604837 C = 2326.108892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.038 3.962 3 Si 0.997 3.003 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.256 1.256 7 C -0.446 4.446 8 H 0.091 0.909 9 C 0.037 3.963 10 C 0.030 3.970 11 N -0.465 5.465 12 C -0.076 4.076 13 C 0.050 3.950 14 F -0.146 7.146 15 C -0.050 4.050 16 O -0.486 6.486 17 H 0.303 0.697 18 H 0.154 0.846 19 H 0.161 0.839 20 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.897 1.823 1.529 3.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.182 4.182 3 Si 0.816 3.184 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.180 1.180 7 C -0.474 4.474 8 H 0.109 0.891 9 C 0.032 3.968 10 C -0.136 4.136 11 N -0.174 5.174 12 C -0.229 4.229 13 C 0.028 3.972 14 F -0.125 7.125 15 C -0.103 4.103 16 O -0.295 6.295 17 H 0.115 0.885 18 H 0.171 0.829 19 H 0.178 0.822 20 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 1.258 1.839 0.507 2.285 hybrid contribution 0.730 0.154 1.185 1.400 sum 1.988 1.993 1.692 3.284 Atomic orbital electron populations 1.69779 1.09226 1.32440 1.30773 1.27005 0.95596 1.05070 0.90497 0.85003 0.78688 0.74284 0.80413 1.18293 1.18481 1.18031 1.19791 0.98666 0.91058 1.37906 0.89076 1.19072 0.93145 0.92731 0.91898 1.23025 0.96573 0.95469 0.98532 1.67171 1.30327 0.98480 1.21377 1.22089 0.98338 0.96472 1.05953 1.19177 0.97064 0.79376 1.01541 1.91349 1.90226 1.41541 1.89420 1.18820 0.95389 0.91467 1.04581 1.84659 1.28887 1.95435 1.20503 0.88532 0.82868 0.82200 0.76239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.30 10.95 21.83 0.24 -37.06 14 2 C 0.04 1.70 5.16 85.25 0.44 2.14 14 3 Si 1.00 33.74 29.60 68.60 2.03 35.77 14 4 H -0.26 -8.72 7.11 99.48 0.71 -8.01 14 5 H -0.26 -8.21 7.11 99.48 0.71 -7.50 14 6 H -0.26 -8.43 7.11 99.48 0.71 -7.72 14 7 C -0.45 -22.21 8.78 23.41 0.21 -22.01 14 8 H 0.09 4.43 7.71 -2.91 -0.02 4.41 14 9 C 0.04 1.95 5.60 -21.11 -0.12 1.84 14 10 C 0.03 1.59 9.90 85.36 0.84 2.44 14 11 N -0.47 -23.60 10.33 -193.77 -2.00 -25.60 14 12 C -0.08 -3.57 11.14 84.65 0.94 -2.63 14 13 C 0.05 2.42 7.34 22.49 0.17 2.59 14 14 F -0.15 -6.51 17.17 44.97 0.77 -5.73 14 15 C -0.05 -2.52 6.81 23.31 0.16 -2.36 14 16 O -0.49 -22.00 12.83 -88.90 -1.14 -23.14 14 17 H 0.30 12.51 8.30 -92.71 -0.77 11.74 14 18 H 0.15 8.04 6.14 -2.91 -0.02 8.02 14 19 H 0.16 6.45 8.06 -2.91 -0.02 6.43 14 20 H 0.38 13.84 9.06 -74.05 -0.67 13.17 14 Total: -1.00 -56.39 196.18 3.16 -53.24 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.62 Total: 20.54 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 2.64 Total: -18.00 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -1.76 Total: -62.67 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -1.14 Total: -23.14 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.77 Total: -5.73 kcal Atomic # 14 Polarization: 33.74 SS G_CDS: 2.03 Total: 35.77 kcal Total: -56.39 3.16 -53.24 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307472391.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.092 kcal (2) G-P(sol) polarization free energy of solvation -56.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds