Wall clock time and date at job start Mon Mar 30 2020 02:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31300 * 1 3 3 Si 1.86798 * 119.99985 * 2 1 4 4 H 1.48507 * 109.47158 * 270.00282 * 3 2 1 5 5 H 1.48502 * 109.47368 * 30.00145 * 3 2 1 6 6 H 1.48499 * 109.47303 * 150.00047 * 3 2 1 7 7 C 1.39131 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00188 * 359.97438 * 7 2 1 9 9 N 1.36755 * 120.00022 * 179.97438 * 7 2 1 10 10 C 1.34781 * 120.00113 * 180.02562 * 9 7 2 11 11 O 1.21552 * 119.99719 * 359.97438 * 10 9 7 12 12 C 1.48101 * 119.99762 * 180.02562 * 10 9 7 13 13 C 1.47546 * 128.71911 * 179.97438 * 12 10 9 14 14 N 1.30620 * 102.71482 * 179.97438 * 13 12 10 15 15 O 1.20828 * 109.64738 * 359.97438 * 14 13 12 16 16 N 1.20901 * 115.93071 * 0.02562 * 15 14 13 17 17 H 0.97003 * 119.99918 * 0.02562 * 1 2 3 18 18 H 0.96999 * 119.99726 * 359.97438 * 9 7 2 19 19 H 1.07995 * 128.63874 * 359.74041 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4944 2.0465 -1.4001 5 1 1.4445 2.6527 0.7001 6 1 3.5445 1.4402 0.7000 7 6 2.0087 -1.2049 -0.0005 8 1 1.4687 -2.1402 -0.0005 9 7 3.3762 -1.2049 -0.0011 10 6 4.0501 -2.3721 -0.0021 11 8 3.4424 -3.4248 -0.0021 12 6 5.5312 -2.3720 -0.0021 13 6 6.4541 -3.5231 -0.0026 14 7 7.6281 -2.9504 -0.0029 15 8 7.4942 -1.7495 -0.0032 16 7 6.3550 -1.3446 -0.0026 17 1 -0.4850 0.8401 -0.0004 18 1 3.8612 -0.3648 -0.0014 19 1 6.2178 -4.5769 0.0007 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307514232.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:24 Heat of formation + Delta-G solvation = 59.040625 kcal Electronic energy + Delta-G solvation = -10513.085916 eV Core-core repulsion = 8228.627801 eV Total energy + Delta-G solvation = -2284.458116 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.043 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -47.86495 -40.41230 -36.37530 -35.69807 -35.37054 -33.94086 -28.35687 -25.92286 -24.79077 -21.77781 -20.94901 -20.02088 -19.17349 -18.24572 -17.10191 -16.02804 -15.80468 -15.48759 -14.88309 -14.52738 -13.70570 -13.15742 -12.92170 -12.57525 -12.33341 -12.10508 -11.83835 -11.62332 -11.09287 -10.49428 -8.61730 -6.19600 -0.23237 0.37986 1.26744 1.29692 1.37131 1.97794 1.99522 2.09574 2.52118 2.69781 3.01943 3.16906 3.81398 3.99736 4.51752 5.29553 5.71166 6.29133 6.57612 7.06082 7.45023 7.55233 8.52793 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.064868 B = 0.012644 C = 0.010621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.542759 B = 2213.926322 C = 2635.626977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.007 3.993 3 Si 0.949 3.051 4 H -0.252 1.252 5 H -0.260 1.260 6 H -0.244 1.244 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.547 5.547 10 C 0.513 3.487 11 O -0.596 6.596 12 C -0.034 4.034 13 C 0.048 3.952 14 N -0.360 5.360 15 O 0.343 5.657 16 N -0.346 5.346 17 H 0.289 0.711 18 H 0.391 0.609 19 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.412 1.135 -0.002 12.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.197 4.197 3 Si 0.769 3.231 4 H -0.176 1.176 5 H -0.184 1.184 6 H -0.168 1.168 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.185 5.185 10 C 0.299 3.701 11 O -0.481 6.481 12 C -0.198 4.198 13 C -0.138 4.138 14 N -0.085 5.085 15 O 0.118 5.882 16 N -0.067 5.067 17 H 0.099 0.901 18 H 0.227 0.773 19 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 12.680 1.347 0.000 12.751 hybrid contribution -0.831 0.229 0.008 0.862 sum 11.849 1.576 0.008 11.953 Atomic orbital electron populations 1.69680 1.07801 1.30234 1.45872 1.26039 0.96430 1.02327 0.94920 0.85575 0.79440 0.77540 0.80576 1.17571 1.18354 1.16791 1.19171 0.80083 0.96136 1.51011 0.90406 1.41913 1.06802 1.07102 1.62681 1.16325 0.83076 0.84476 0.86254 1.90671 1.68105 1.31705 1.57622 1.26190 0.97169 0.89777 1.06635 1.28037 0.83850 1.03542 0.98339 1.74992 1.23994 0.92134 1.17419 1.85002 1.22339 1.17626 1.63196 1.75384 0.91969 1.24226 1.15084 0.90061 0.77261 0.73081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.56 13.95 21.69 0.30 -50.25 13 2 C 0.01 0.36 5.50 84.99 0.47 0.83 13 3 Si 0.95 37.77 27.74 68.60 1.90 39.67 13 4 H -0.25 -9.52 7.11 99.48 0.71 -8.81 13 5 H -0.26 -9.88 7.11 99.48 0.71 -9.18 13 6 H -0.24 -8.88 6.52 99.48 0.65 -8.23 13 7 C -0.33 -18.85 10.16 84.14 0.85 -17.99 13 8 H 0.08 5.07 7.38 -2.91 -0.02 5.04 13 9 N -0.55 -26.43 5.08 -309.43 -1.57 -28.01 13 10 C 0.51 23.80 7.79 86.86 0.68 24.48 13 11 O -0.60 -31.71 16.62 -3.88 -0.06 -31.78 13 12 C -0.03 -1.21 7.56 44.24 0.33 -0.88 13 13 C 0.05 1.32 12.63 87.33 1.10 2.42 13 14 N -0.36 -9.65 12.21 -61.37 -0.75 -10.40 13 15 O 0.34 9.65 11.65 140.87 1.64 11.29 13 16 N -0.35 -11.33 12.14 -51.92 -0.63 -11.96 13 17 H 0.29 14.69 8.31 -92.71 -0.77 13.92 13 18 H 0.39 16.78 5.61 -92.71 -0.52 16.26 13 19 H 0.25 5.17 8.06 -2.91 -0.02 5.14 13 Total: -1.00 -63.43 193.12 4.99 -58.43 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.73 Total: 14.15 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 3.44 Total: 8.86 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -2.65 Total: -100.63 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 1.58 Total: -20.48 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 1.90 Total: 39.67 kcal Total: -63.43 4.99 -58.43 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307514232.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.472 kcal (2) G-P(sol) polarization free energy of solvation -63.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds