Wall clock time and date at job start Mon Mar 30 2020 01:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00034 * 2 1 4 4 H 1.48505 * 109.46857 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47162 * 299.99665 * 3 2 1 6 6 H 1.48501 * 109.47140 * 59.99794 * 3 2 1 7 7 C 1.38812 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00106 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00181 * 0.02562 * 7 2 1 10 10 C 1.46508 * 120.00235 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46976 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.47158 * 179.97438 * 11 10 9 13 13 C 1.48221 * 111.00247 * 170.00122 * 12 11 10 14 14 C 1.51125 * 105.44007 * 144.85390 * 13 12 11 15 15 C 1.31118 * 109.36885 * 343.14410 * 14 13 12 16 16 C 1.48226 * 110.99914 * 283.64385 * 12 11 10 17 17 H 0.97006 * 119.99953 * 0.02562 * 1 2 3 18 18 H 0.97004 * 120.00035 * 0.02562 * 9 7 2 19 19 H 1.08997 * 109.46873 * 60.00065 * 10 9 7 20 20 H 1.08997 * 109.47188 * 300.00361 * 10 9 7 21 21 H 1.09005 * 109.47080 * 60.00449 * 11 10 9 22 22 H 1.08997 * 109.47390 * 300.00155 * 11 10 9 23 23 H 1.09002 * 110.26794 * 263.87454 * 13 12 11 24 24 H 1.09003 * 110.26777 * 25.83869 * 13 12 11 25 25 H 1.07997 * 125.26823 * 163.07536 * 14 13 12 26 26 H 1.07997 * 125.24482 * 179.97438 * 15 14 13 27 27 H 1.09000 * 110.27046 * 334.06789 * 16 12 11 28 28 H 1.09002 * 110.27137 * 96.03479 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0638 -4.8197 -0.0001 12 7 1.7982 -6.0920 -0.0007 13 6 0.8836 -7.2334 0.2389 14 6 1.4293 -8.3685 -0.5964 15 6 2.2587 -7.8896 -1.4920 16 6 2.3465 -6.3881 -1.3456 17 1 -0.4850 0.8401 -0.0004 18 1 0.3555 -2.3881 -0.0002 19 1 2.6847 -3.7146 0.8905 20 1 2.6848 -3.7146 -0.8894 21 1 0.4375 -4.7618 -0.8904 22 1 0.4368 -4.7622 0.8896 23 1 0.8877 -7.5055 1.2944 24 1 -0.1273 -6.9810 -0.0814 25 1 1.1761 -9.4111 -0.4733 26 1 2.7947 -8.4775 -2.2224 27 1 1.7481 -5.8982 -2.1137 28 1 3.3843 -6.0611 -1.4107 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307650971.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:58 Heat of formation + Delta-G solvation = 45.496143 kcal Electronic energy + Delta-G solvation = -10611.291723 eV Core-core repulsion = 8663.338375 eV Total energy + Delta-G solvation = -1947.953348 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.26268 -34.96570 -32.56789 -30.54527 -28.31599 -26.92804 -23.58452 -21.76432 -20.65264 -19.21285 -17.15051 -16.17660 -15.19501 -14.61628 -14.01913 -13.60790 -13.11944 -12.97414 -12.36628 -12.23887 -12.06537 -11.23424 -11.13291 -10.88632 -10.71765 -10.47768 -9.99411 -9.68684 -9.42302 -8.83833 -8.14924 -6.88989 -5.73691 -3.02318 2.14126 3.45934 3.51256 3.53931 4.12949 4.64563 4.76543 4.77617 5.43409 5.47313 5.57851 5.59061 5.66923 5.73268 5.83118 5.99720 6.15342 6.26136 6.33789 6.63709 6.79937 6.85353 7.06640 7.27314 7.74475 8.45416 9.56140 10.13965 10.48702 11.49616 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.111140 B = 0.007337 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 251.873359 B = 3815.487118 C = 3950.118082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.235 4.235 8 H 0.072 0.928 9 N -0.735 5.735 10 C 0.160 3.840 11 C 0.038 3.962 12 N -0.501 5.501 13 C 0.051 3.949 14 C -0.174 4.174 15 C -0.167 4.167 16 C 0.050 3.950 17 H 0.254 0.746 18 H 0.382 0.618 19 H 0.029 0.971 20 H 0.018 0.982 21 H 0.039 0.961 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.059 0.941 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 -14.368 -1.909 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.090 0.910 9 N -0.380 5.380 10 C 0.033 3.967 11 C -0.091 4.091 12 N -0.225 5.225 13 C -0.077 4.077 14 C -0.192 4.192 15 C -0.186 4.186 16 C -0.077 4.077 17 H 0.064 0.936 18 H 0.216 0.784 19 H 0.047 0.953 20 H 0.036 0.964 21 H 0.057 0.943 22 H 0.094 0.906 23 H 0.102 0.898 24 H 0.074 0.926 25 H 0.150 0.850 26 H 0.150 0.850 27 H 0.077 0.923 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.729 -14.164 -1.474 14.500 hybrid contribution -0.555 0.848 -0.653 1.205 sum 2.174 -13.317 -2.127 13.659 Atomic orbital electron populations 1.69677 1.05136 1.25501 1.58120 1.24752 0.95558 0.97725 1.03160 0.86088 0.78799 0.84002 0.77152 1.20511 1.21895 1.21856 1.19287 0.91121 0.84021 1.42245 0.91032 1.42321 1.05877 1.00077 1.89681 1.20506 0.93256 0.84566 0.98411 1.22569 0.96340 0.89067 1.01076 1.65548 1.29736 1.01699 1.25549 1.22066 0.95379 0.89727 1.00480 1.23599 0.98911 0.98941 0.97774 1.23673 0.99235 0.96314 0.99341 1.22148 1.01835 0.92958 0.90779 0.93595 0.78446 0.95344 0.96432 0.94269 0.90585 0.89778 0.92637 0.85013 0.85022 0.92272 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.93 13.06 55.49 0.72 -28.20 15 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 15 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.85 15 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 15 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 15 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 15 8 H 0.07 2.02 7.83 -52.49 -0.41 1.61 15 9 N -0.73 -19.56 5.60 -59.91 -0.34 -19.90 15 10 C 0.16 3.49 6.40 -4.04 -0.03 3.46 15 11 C 0.04 0.68 4.77 -3.82 -0.02 0.66 15 12 N -0.50 -7.93 5.52 -234.68 -1.29 -9.22 15 13 C 0.05 0.67 6.62 -4.04 -0.03 0.64 15 14 C -0.17 -1.96 10.96 -35.85 -0.39 -2.35 15 15 C -0.17 -1.94 10.95 -35.85 -0.39 -2.33 15 16 C 0.05 0.71 6.08 -4.04 -0.02 0.69 15 17 H 0.25 7.55 8.31 -40.82 -0.34 7.21 15 18 H 0.38 10.56 7.67 -40.82 -0.31 10.25 15 19 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 20 H 0.02 0.39 7.75 -51.93 -0.40 -0.01 15 21 H 0.04 0.71 7.64 -51.93 -0.40 0.31 15 22 H 0.08 1.36 8.08 -51.93 -0.42 0.94 15 23 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.06 0.71 7.79 -51.93 -0.40 0.31 15 25 H 0.13 1.15 8.06 -52.49 -0.42 0.72 15 26 H 0.13 1.20 8.06 -52.49 -0.42 0.78 15 27 H 0.06 0.86 7.48 -51.93 -0.39 0.47 15 28 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15 LS Contribution 239.41 15.07 3.61 3.61 Total: -1.00 -31.31 239.41 -7.43 -38.74 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -3.98 Total: 3.91 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -1.13 Total: -6.80 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.91 Total: -57.32 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.31 -7.43 -38.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307650971.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.240 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds