Wall clock time and date at job start Mon Mar 30 2020 01:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46986 * 2 1 4 4 C 1.50702 * 109.47101 * 119.99460 * 2 1 3 5 5 H 1.08001 * 119.99711 * 120.00151 * 4 2 1 6 6 C 1.37870 * 120.00299 * 299.99792 * 4 2 1 7 7 N 1.31515 * 119.99898 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00305 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47078 * 60.00292 * 8 6 4 10 10 H 1.48498 * 109.47259 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46876 * 300.00542 * 8 6 4 12 12 N 1.46499 * 109.47147 * 239.99760 * 2 1 3 13 13 N 1.40105 * 120.00063 * 89.99836 * 12 2 1 14 14 C 1.28009 * 119.99643 * 179.97438 * 13 12 2 15 15 C 1.50706 * 119.99406 * 179.97438 * 14 13 12 16 16 C 1.52999 * 117.49476 * 188.62191 * 15 14 13 17 17 C 1.52999 * 60.00071 * 252.51182 * 16 15 14 18 18 H 1.09005 * 109.46870 * 300.00416 * 1 2 3 19 19 H 1.08998 * 109.46834 * 60.00405 * 1 2 3 20 20 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 21 21 H 0.97004 * 120.00278 * 180.02562 * 7 6 4 22 22 H 0.96999 * 119.99984 * 269.99344 * 12 2 1 23 23 H 1.07995 * 120.00369 * 0.27816 * 14 13 12 24 24 H 1.08994 * 115.55303 * 334.33285 * 15 14 13 25 25 H 1.09002 * 117.49924 * 359.97438 * 16 15 14 26 26 H 1.08996 * 117.49693 * 145.02363 * 16 15 14 27 27 H 1.08996 * 117.50278 * 252.51025 * 17 16 15 28 28 H 1.09007 * 117.51913 * 107.48028 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 0.9429 0.8298 2.6033 8 14 2.3214 -1.1200 4.0080 9 1 3.8064 -1.1206 4.0083 10 1 1.8261 -0.4202 5.2205 11 1 1.8259 -2.5199 4.0078 12 7 2.0183 -0.6907 -1.1961 13 7 2.2518 0.0298 -2.3748 14 6 2.6790 -0.5736 -3.4198 15 6 2.9296 0.2013 -4.6878 16 6 3.2435 -0.5982 -5.9539 17 6 4.3513 0.1905 -5.2530 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 0.7088 1.1616 3.4843 22 1 2.1801 -1.6468 -1.1720 23 1 2.8551 -1.6388 -3.3942 24 1 2.3498 1.1173 -4.8014 25 1 3.2691 -1.6847 -5.8697 26 1 2.8700 -0.2084 -6.9008 27 1 4.7068 1.0993 -5.7387 28 1 5.1055 -0.3767 -4.7074 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307882405.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:07 Heat of formation + Delta-G solvation = 58.438395 kcal Electronic energy + Delta-G solvation = -10435.442239 eV Core-core repulsion = 8488.050109 eV Total energy + Delta-G solvation = -1947.392130 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.50720 -35.85636 -33.68193 -31.06552 -27.45465 -25.20194 -23.06728 -22.23144 -20.20662 -19.57637 -17.03400 -15.86734 -15.18578 -14.67249 -14.16291 -13.39475 -12.61839 -12.42183 -11.70876 -11.53166 -11.41472 -11.01465 -10.94338 -10.69545 -10.34963 -10.22897 -10.13692 -9.83718 -9.32137 -8.95907 -8.47844 -6.84751 -6.10103 -4.18140 2.93225 3.27317 3.31759 3.33591 3.85568 4.21770 4.39420 5.05324 5.13248 5.21261 5.22298 5.49579 5.71313 5.94059 6.20833 6.25589 6.42997 6.79620 7.04746 7.05836 7.21833 7.62312 7.84387 7.92369 8.22523 8.39198 8.90870 9.47628 9.50683 10.95847 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.079607 B = 0.007624 C = 0.007267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.644766 B = 3671.641376 C = 3852.355585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.299 3.701 3 H 0.040 0.960 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.638 5.638 13 N -0.209 5.209 14 C -0.010 4.010 15 C -0.079 4.079 16 C -0.176 4.176 17 C -0.175 4.175 18 H 0.089 0.911 19 H 0.011 0.989 20 H 0.024 0.976 21 H 0.264 0.736 22 H 0.366 0.634 23 H 0.089 0.911 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.170 -2.517 -10.511 11.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.196 3.804 3 H 0.058 0.942 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.375 5.375 13 N -0.018 5.018 14 C -0.224 4.224 15 C -0.100 4.100 16 C -0.214 4.214 17 C -0.214 4.214 18 H 0.107 0.893 19 H 0.031 0.969 20 H 0.043 0.957 21 H 0.074 0.926 22 H 0.201 0.799 23 H 0.106 0.894 24 H 0.129 0.871 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.721 -1.390 -9.794 10.259 hybrid contribution 0.543 -1.730 0.712 1.948 sum 3.264 -3.120 -9.081 10.142 Atomic orbital electron populations 1.22204 0.99249 0.99058 1.00406 1.18457 0.90000 0.93460 0.78452 0.94246 1.21220 1.32114 1.13200 0.90331 0.92358 1.24862 0.94879 0.95028 0.98918 1.69887 1.36077 1.22577 1.23937 0.86491 0.79161 0.79590 0.81750 1.20202 1.21080 1.20211 1.48930 1.74271 1.07434 1.06877 1.73234 1.05435 1.28808 0.94353 1.24262 1.08570 0.96388 0.93135 1.20497 0.98723 1.00231 0.90522 1.22952 1.03672 0.98840 0.95977 1.22949 0.92151 1.02437 1.03846 0.89270 0.96941 0.95651 0.92555 0.79865 0.89385 0.87126 0.88890 0.88766 0.88800 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.29 37.16 0.35 -3.48 15 2 C 0.30 7.93 3.23 -69.08 -0.22 7.71 15 3 H 0.04 1.16 8.14 -51.93 -0.42 0.74 15 4 C -0.53 -14.65 8.74 -34.44 -0.30 -14.95 15 5 H 0.06 1.58 7.79 -52.49 -0.41 1.17 15 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 15 7 N -0.89 -25.22 11.32 55.43 0.63 -24.60 15 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 15 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 12 N -0.64 -14.92 6.09 -5.88 -0.04 -14.95 15 13 N -0.21 -4.52 11.41 32.67 0.37 -4.15 15 14 C -0.01 -0.18 10.55 -13.87 -0.15 -0.32 15 15 C -0.08 -1.12 6.25 -91.77 -0.57 -1.69 15 16 C -0.18 -1.93 10.23 -26.73 -0.27 -2.20 15 17 C -0.17 -2.05 10.23 -26.73 -0.27 -2.32 15 18 H 0.09 2.43 6.07 -51.93 -0.32 2.11 15 19 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 15 20 H 0.02 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 22 H 0.37 7.95 8.56 -182.59 -1.56 6.39 15 23 H 0.09 1.43 8.00 -52.49 -0.42 1.01 15 24 H 0.11 1.56 8.14 -51.93 -0.42 1.14 15 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 15 27 H 0.09 0.96 8.14 -51.93 -0.42 0.53 15 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 LS Contribution 247.37 15.07 3.73 3.73 Total: -1.00 -28.90 247.37 -7.09 -36.00 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.22 Total: 3.40 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.54 Total: -15.53 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.96 Total: -43.70 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.90 -7.09 -36.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307882405.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.436 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds