Wall clock time and date at job start Mon Mar 30 2020 01:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46986 * 2 1 4 4 C 1.50702 * 109.47101 * 119.99460 * 2 1 3 5 5 H 1.08001 * 119.99711 * 120.00151 * 4 2 1 6 6 C 1.37870 * 120.00299 * 299.99792 * 4 2 1 7 7 N 1.31515 * 119.99898 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00305 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47078 * 60.00292 * 8 6 4 10 10 H 1.48498 * 109.47259 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46876 * 300.00542 * 8 6 4 12 12 N 1.46499 * 109.47147 * 239.99760 * 2 1 3 13 13 N 1.40105 * 120.00063 * 89.99836 * 12 2 1 14 14 C 1.28009 * 119.99643 * 179.97438 * 13 12 2 15 15 C 1.50706 * 119.99406 * 179.97438 * 14 13 12 16 16 C 1.52999 * 117.49476 * 188.62191 * 15 14 13 17 17 C 1.52999 * 60.00071 * 252.51182 * 16 15 14 18 18 H 1.09005 * 109.46870 * 300.00416 * 1 2 3 19 19 H 1.08998 * 109.46834 * 60.00405 * 1 2 3 20 20 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 21 21 H 0.97004 * 120.00278 * 180.02562 * 7 6 4 22 22 H 0.96999 * 119.99984 * 269.99344 * 12 2 1 23 23 H 1.07995 * 120.00369 * 0.27816 * 14 13 12 24 24 H 1.08994 * 115.55303 * 334.33285 * 15 14 13 25 25 H 1.09002 * 117.49924 * 359.97438 * 16 15 14 26 26 H 1.08996 * 117.49693 * 145.02363 * 16 15 14 27 27 H 1.08996 * 117.50278 * 252.51025 * 17 16 15 28 28 H 1.09007 * 117.51913 * 107.48028 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 0.9429 0.8298 2.6033 8 14 2.3214 -1.1200 4.0080 9 1 3.8064 -1.1206 4.0083 10 1 1.8261 -0.4202 5.2205 11 1 1.8259 -2.5199 4.0078 12 7 2.0183 -0.6907 -1.1961 13 7 2.2518 0.0298 -2.3748 14 6 2.6790 -0.5736 -3.4198 15 6 2.9296 0.2013 -4.6878 16 6 3.2435 -0.5982 -5.9539 17 6 4.3513 0.1905 -5.2530 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 0.7088 1.1616 3.4843 22 1 2.1801 -1.6468 -1.1720 23 1 2.8551 -1.6388 -3.3942 24 1 2.3498 1.1173 -4.8014 25 1 3.2691 -1.6847 -5.8697 26 1 2.8700 -0.2084 -6.9008 27 1 4.7068 1.0993 -5.7387 28 1 5.1055 -0.3767 -4.7074 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307882405.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:06 Heat of formation + Delta-G solvation = 40.328769 kcal Electronic energy + Delta-G solvation = -10436.227532 eV Core-core repulsion = 8488.050109 eV Total energy + Delta-G solvation = -1948.177422 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.77463 -37.43995 -35.52822 -33.00231 -29.23762 -27.31404 -24.50371 -23.11852 -22.16866 -20.89775 -18.83376 -17.59364 -17.00187 -16.10199 -15.47372 -14.96380 -14.50062 -14.27604 -13.42476 -13.11250 -12.82048 -12.74240 -12.52476 -12.28108 -12.23624 -12.08199 -11.34146 -11.22682 -10.99925 -10.76077 -10.56610 -8.57705 -8.17955 -6.35431 1.41915 1.44287 1.51692 1.53083 2.21548 2.48458 3.10223 3.18520 3.93825 4.08189 4.15976 4.32399 4.70697 4.87555 4.91506 5.01297 5.07295 5.13393 5.26871 5.36038 5.39162 5.54953 5.79396 5.88745 6.20626 6.44203 6.86082 7.36452 7.89052 8.87181 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.079607 B = 0.007624 C = 0.007267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.644766 B = 3671.641376 C = 3852.355585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.307 3.693 3 H -0.003 1.003 4 C -0.549 4.549 5 H 0.060 0.940 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.268 1.268 12 N -0.655 5.655 13 N -0.265 5.265 14 C 0.031 3.969 15 C -0.118 4.118 16 C -0.148 4.148 17 C -0.165 4.165 18 H 0.069 0.931 19 H 0.016 0.984 20 H 0.029 0.971 21 H 0.267 0.733 22 H 0.370 0.630 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.103 0.897 26 H 0.118 0.882 27 H 0.112 0.888 28 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.102 -3.648 -11.751 12.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.203 3.797 3 H 0.015 0.985 4 C -0.588 4.588 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.192 1.192 12 N -0.393 5.393 13 N -0.072 5.072 14 C -0.183 4.183 15 C -0.139 4.139 16 C -0.186 4.186 17 C -0.204 4.204 18 H 0.087 0.913 19 H 0.035 0.965 20 H 0.048 0.952 21 H 0.076 0.924 22 H 0.207 0.793 23 H 0.121 0.879 24 H 0.125 0.875 25 H 0.121 0.879 26 H 0.136 0.864 27 H 0.130 0.870 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.656 -2.527 -11.055 11.915 hybrid contribution 0.324 -1.371 0.864 1.653 sum 3.980 -3.899 -10.191 11.615 Atomic orbital electron populations 1.22017 0.98943 0.98949 0.99546 1.18068 0.90215 0.91451 0.79942 0.98492 1.21505 1.32565 1.13503 0.91267 0.92208 1.25745 0.94866 0.95671 1.01987 1.70016 1.36818 1.23755 1.24764 0.85402 0.78573 0.78641 0.77722 1.19773 1.20490 1.19245 1.48458 1.76414 1.07323 1.07078 1.73317 1.09556 1.29486 0.94834 1.25022 1.02918 0.97511 0.92858 1.20629 1.01475 1.01173 0.90581 1.23101 1.01369 0.99202 0.94923 1.23056 0.90786 1.03473 1.03068 0.91259 0.96489 0.95190 0.92356 0.79344 0.87877 0.87528 0.87868 0.86415 0.86991 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.09 9.29 71.98 0.67 -6.42 15 2 C 0.31 16.88 3.23 44.25 0.14 17.02 15 3 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 15 4 C -0.55 -30.92 8.74 25.60 0.22 -30.70 15 5 H 0.06 3.26 7.79 -2.91 -0.02 3.23 15 6 C 0.02 0.97 5.30 84.65 0.45 1.42 15 7 N -0.92 -53.03 11.32 21.44 0.24 -52.78 15 8 Si 0.97 43.29 29.54 68.60 2.03 45.31 15 9 H -0.27 -11.88 7.11 99.48 0.71 -11.18 15 10 H -0.28 -12.10 7.11 99.48 0.71 -11.40 15 11 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 12 N -0.66 -31.25 6.09 -172.52 -1.05 -32.30 15 13 N -0.27 -11.58 11.41 -50.46 -0.58 -12.16 15 14 C 0.03 1.06 10.55 88.67 0.94 2.00 15 15 C -0.12 -3.06 6.25 -11.54 -0.07 -3.14 15 16 C -0.15 -2.64 10.23 30.59 0.31 -2.33 15 17 C -0.17 -3.32 10.23 30.59 0.31 -3.01 15 18 H 0.07 3.89 6.07 -2.38 -0.01 3.87 15 19 H 0.02 0.81 8.14 -2.39 -0.02 0.79 15 20 H 0.03 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.27 14.57 8.31 -92.71 -0.77 13.80 15 22 H 0.37 16.27 8.56 -213.32 -1.83 14.45 15 23 H 0.10 3.13 8.00 -2.91 -0.02 3.11 15 24 H 0.11 2.88 8.14 -2.39 -0.02 2.86 15 25 H 0.10 1.68 8.14 -2.39 -0.02 1.66 15 26 H 0.12 1.61 8.14 -2.39 -0.02 1.59 15 27 H 0.11 1.88 8.14 -2.39 -0.02 1.86 15 28 H 0.09 1.90 8.14 -2.38 -0.02 1.88 15 Total: -1.00 -62.96 247.37 2.93 -60.04 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -0.69 Total: 17.05 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 2.97 Total: -25.16 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -1.38 Total: -97.24 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -62.96 2.93 -60.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307882405.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.366 kcal (2) G-P(sol) polarization free energy of solvation -62.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds