Wall clock time and date at job start Mon Mar 30 2020 01:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.97260 * 305.18012 * 10 9 7 12 12 C 1.54282 * 109.98153 * 183.87282 * 10 9 7 13 13 C 1.54985 * 103.74814 * 217.52649 * 12 10 9 14 14 C 1.54891 * 102.33551 * 37.08347 * 13 12 10 15 15 C 1.51445 * 109.98766 * 66.45384 * 10 9 7 16 16 N 1.28008 * 126.33933 * 298.96883 * 15 10 9 17 17 N 1.40103 * 119.99782 * 179.97438 * 16 15 10 18 18 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 20 20 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 21 21 H 1.09002 * 110.56771 * 336.08903 * 12 10 9 22 22 H 1.08998 * 110.57148 * 98.95959 * 12 10 9 23 23 H 1.08999 * 110.83379 * 278.86795 * 13 12 10 24 24 H 1.08999 * 110.83219 * 155.29731 * 13 12 10 25 25 H 1.09001 * 110.44059 * 203.63656 * 14 13 12 26 26 H 1.08996 * 110.54477 * 81.16088 * 14 13 12 27 27 H 0.96998 * 120.00066 * 0.02562 * 17 16 15 28 28 H 0.97003 * 120.00077 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 1 3.5887 -3.1845 0.8380 12 6 5.5610 -2.6516 0.0995 13 6 5.9775 -3.8278 -0.8197 14 6 4.9566 -3.7190 -1.9794 15 6 3.6584 -3.3139 -1.3040 16 7 2.4761 -3.5090 -1.7541 17 7 2.2925 -4.1529 -2.9848 18 1 -0.4850 0.8401 -0.0004 19 1 3.8745 -0.6801 0.8912 20 1 3.8752 -0.6804 -0.8888 21 1 5.9773 -1.7132 -0.2670 22 1 5.8774 -2.8371 1.1260 23 1 5.8745 -4.7807 -0.3006 24 1 6.9954 -3.6925 -1.1852 25 1 4.8423 -4.6818 -2.4775 26 1 5.2684 -2.9566 -2.6932 27 1 3.0613 -4.4511 -3.4956 28 1 1.3965 -4.3011 -3.3258 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394584089.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:44 Heat of formation + Delta-G solvation = 21.715520 kcal Electronic energy + Delta-G solvation = -11068.882250 eV Core-core repulsion = 9119.897697 eV Total energy + Delta-G solvation = -1948.984554 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.27587 -34.69077 -32.79744 -30.55173 -29.05256 -26.55396 -24.47857 -21.27178 -20.31941 -17.96049 -16.50822 -16.26555 -15.43600 -14.94416 -14.03365 -13.00837 -12.74362 -12.49909 -12.32090 -11.83056 -11.45997 -10.97018 -10.81595 -10.72403 -10.44665 -9.98296 -9.80175 -9.38297 -9.09073 -8.69223 -8.34345 -7.40170 -5.83181 -3.77432 3.20762 3.40494 3.47550 3.50319 3.97428 4.60810 5.07952 5.19631 5.36266 5.49138 5.64380 5.87839 5.94218 6.05388 6.12857 6.26647 6.43816 6.54070 6.78762 6.92708 7.16014 7.37258 7.53730 7.96898 8.27206 8.78555 9.29356 9.35993 9.79709 11.30779 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.041835 B = 0.014602 C = 0.011820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.128078 B = 1917.071510 C = 2368.358972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.062 3.938 3 Si 0.871 3.129 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.498 4.498 8 H 0.088 0.912 9 C -0.005 4.005 10 C -0.019 4.019 11 H 0.078 0.922 12 C -0.122 4.122 13 C -0.116 4.116 14 C -0.117 4.117 15 C 0.060 3.940 16 N -0.184 5.184 17 N -0.803 5.803 18 H 0.258 0.742 19 H 0.020 0.980 20 H 0.009 0.991 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.361 0.639 28 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.987 -6.515 -3.193 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.137 4.137 3 Si 0.699 3.301 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.536 4.536 8 H 0.106 0.894 9 C -0.043 4.043 10 C -0.040 4.040 11 H 0.096 0.904 12 C -0.160 4.160 13 C -0.154 4.154 14 C -0.157 4.157 15 C -0.137 4.137 16 N 0.010 4.990 17 N -0.455 5.455 18 H 0.068 0.932 19 H 0.038 0.962 20 H 0.027 0.973 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.190 0.810 28 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 9.806 -6.252 -2.984 12.006 hybrid contribution 1.021 0.675 -0.890 1.513 sum 10.827 -5.577 -3.874 12.780 Atomic orbital electron populations 1.69924 1.06139 1.26181 1.52549 1.24999 0.94639 0.98605 0.95455 0.86929 0.80460 0.84559 0.78156 1.20802 1.21658 1.19134 1.21274 0.89104 0.94961 1.48298 0.89419 1.19637 0.97898 0.90619 0.96116 1.20488 0.92661 0.98276 0.92549 0.90403 1.22520 0.96230 0.97999 0.99216 1.22371 0.97609 0.99083 0.96336 1.21767 0.95226 1.00405 0.98334 1.24854 0.89015 1.00931 0.98919 1.73994 1.20868 1.06157 0.97971 1.45653 1.09065 1.70295 1.20455 0.93210 0.96208 0.97268 0.91450 0.91539 0.91587 0.91869 0.92290 0.90806 0.80979 0.75629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.06 13.96 55.43 0.77 -28.28 15 2 C 0.06 1.88 5.47 -17.82 -0.10 1.78 15 3 Si 0.87 22.44 27.47 -169.99 -4.67 17.77 15 4 H -0.28 -7.23 7.11 56.52 0.40 -6.83 15 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 15 6 H -0.27 -6.52 6.54 56.52 0.37 -6.15 15 7 C -0.50 -14.54 8.79 -34.44 -0.30 -14.85 15 8 H 0.09 2.79 7.09 -52.49 -0.37 2.42 15 9 C 0.00 -0.11 3.38 -27.88 -0.09 -0.21 15 10 C -0.02 -0.38 2.83 -90.73 -0.26 -0.64 15 11 H 0.08 1.61 8.14 -51.93 -0.42 1.19 15 12 C -0.12 -1.88 6.40 -25.01 -0.16 -2.04 15 13 C -0.12 -1.54 6.95 -24.69 -0.17 -1.71 15 14 C -0.12 -1.77 5.93 -26.32 -0.16 -1.93 15 15 C 0.06 1.20 6.64 -77.98 -0.52 0.68 15 16 N -0.18 -4.07 10.26 36.05 0.37 -3.70 15 17 N -0.80 -13.95 10.39 60.35 0.63 -13.32 15 18 H 0.26 7.78 8.31 -40.82 -0.34 7.44 15 19 H 0.02 0.47 7.20 -51.93 -0.37 0.10 15 20 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 15 21 H 0.07 1.03 7.85 -51.93 -0.41 0.63 15 22 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.06 0.80 7.34 -51.93 -0.38 0.42 15 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 27 H 0.36 5.23 7.36 -182.60 -1.34 3.88 15 28 H 0.41 6.47 8.96 -182.59 -1.64 4.83 15 LS Contribution 231.62 15.07 3.49 3.49 Total: -1.00 -33.03 231.62 -7.35 -40.38 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.19 Total: 2.58 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -1.76 Total: -18.91 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 1.77 Total: -45.31 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -33.03 -7.35 -40.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394584089.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.098 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds