Wall clock time and date at job start Mon Mar 30 2020 01:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.97260 * 305.18012 * 10 9 7 12 12 C 1.54282 * 109.98153 * 183.87282 * 10 9 7 13 13 C 1.54985 * 103.74814 * 217.52649 * 12 10 9 14 14 C 1.54891 * 102.33551 * 37.08347 * 13 12 10 15 15 C 1.51445 * 109.98766 * 66.45384 * 10 9 7 16 16 N 1.28008 * 126.33933 * 298.96883 * 15 10 9 17 17 N 1.40103 * 119.99782 * 179.97438 * 16 15 10 18 18 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 20 20 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 21 21 H 1.09002 * 110.56771 * 336.08903 * 12 10 9 22 22 H 1.08998 * 110.57148 * 98.95959 * 12 10 9 23 23 H 1.08999 * 110.83379 * 278.86795 * 13 12 10 24 24 H 1.08999 * 110.83219 * 155.29731 * 13 12 10 25 25 H 1.09001 * 110.44059 * 203.63656 * 14 13 12 26 26 H 1.08996 * 110.54477 * 81.16088 * 14 13 12 27 27 H 0.96998 * 120.00066 * 0.02562 * 17 16 15 28 28 H 0.97003 * 120.00077 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 1 3.5887 -3.1845 0.8380 12 6 5.5610 -2.6516 0.0995 13 6 5.9775 -3.8278 -0.8197 14 6 4.9566 -3.7190 -1.9794 15 6 3.6584 -3.3139 -1.3040 16 7 2.4761 -3.5090 -1.7541 17 7 2.2925 -4.1529 -2.9848 18 1 -0.4850 0.8401 -0.0004 19 1 3.8745 -0.6801 0.8912 20 1 3.8752 -0.6804 -0.8888 21 1 5.9773 -1.7132 -0.2670 22 1 5.8774 -2.8371 1.1260 23 1 5.8745 -4.7807 -0.3006 24 1 6.9954 -3.6925 -1.1852 25 1 4.8423 -4.6818 -2.4775 26 1 5.2684 -2.9566 -2.6932 27 1 3.0613 -4.4511 -3.4956 28 1 1.3965 -4.3011 -3.3258 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394584089.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:44 Heat of formation + Delta-G solvation = -1.907121 kcal Electronic energy + Delta-G solvation = -11069.906605 eV Core-core repulsion = 9119.897697 eV Total energy + Delta-G solvation = -1950.008908 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.69051 -36.17265 -34.87325 -32.35875 -30.48150 -28.21055 -26.01842 -23.18575 -21.58018 -19.47646 -18.67146 -17.70796 -16.87867 -16.47088 -15.93215 -14.64247 -14.33119 -14.17058 -13.75939 -13.47034 -13.25973 -12.78910 -12.36068 -11.95718 -11.86043 -11.68636 -11.43142 -11.27803 -11.01434 -10.66765 -10.24152 -8.85730 -8.14036 -6.13270 1.36691 1.38429 1.49972 1.69484 2.43651 2.61748 3.20195 3.87495 3.97249 4.26958 4.30494 4.57560 4.67437 4.85443 4.95900 5.02124 5.16785 5.22678 5.32267 5.44345 5.52978 5.69438 5.79198 5.85788 6.51338 6.95273 7.02765 7.47296 7.90054 9.03344 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.041835 B = 0.014602 C = 0.011820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.128078 B = 1917.071510 C = 2368.358972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.007 4.007 3 Si 0.942 3.058 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.240 1.240 7 C -0.498 4.498 8 H 0.046 0.954 9 C -0.001 4.001 10 C -0.027 4.027 11 H 0.060 0.940 12 C -0.114 4.114 13 C -0.104 4.104 14 C -0.112 4.112 15 C 0.049 3.951 16 N -0.247 5.247 17 N -0.794 5.794 18 H 0.259 0.741 19 H 0.027 0.973 20 H 0.009 0.991 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.377 0.623 28 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.076 -6.361 -3.517 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.201 4.201 3 Si 0.767 3.233 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.163 1.163 7 C -0.537 4.537 8 H 0.064 0.936 9 C -0.040 4.040 10 C -0.048 4.048 11 H 0.079 0.921 12 C -0.152 4.152 13 C -0.142 4.142 14 C -0.152 4.152 15 C -0.148 4.148 16 N -0.053 5.053 17 N -0.448 5.448 18 H 0.067 0.933 19 H 0.046 0.954 20 H 0.028 0.972 21 H 0.091 0.909 22 H 0.104 0.896 23 H 0.094 0.906 24 H 0.114 0.886 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.208 0.792 28 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 12.930 -6.120 -3.310 14.683 hybrid contribution -0.025 0.531 -0.794 0.956 sum 12.905 -5.589 -4.104 14.650 Atomic orbital electron populations 1.70105 1.08257 1.27241 1.54677 1.25981 0.95533 1.03111 0.95466 0.85778 0.79928 0.79092 0.78514 1.20350 1.21444 1.16340 1.21575 0.91884 0.93370 1.46827 0.93582 1.19573 0.94425 0.93834 0.96136 1.20560 0.96318 0.95312 0.92596 0.92124 1.22479 0.91945 0.99518 1.01263 1.22374 0.98540 0.98474 0.94787 1.21815 0.93075 1.01302 0.99053 1.25214 0.90438 1.00049 0.99054 1.73879 1.23143 1.08028 1.00299 1.45461 1.10049 1.69876 1.19440 0.93259 0.95445 0.97230 0.90882 0.89553 0.90583 0.88551 0.90544 0.90146 0.79178 0.75141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.50 13.96 21.45 0.30 -63.20 15 2 C -0.01 -0.40 5.47 84.65 0.46 0.06 15 3 Si 0.94 46.26 27.47 68.60 1.88 48.14 15 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 15 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 15 6 H -0.24 -10.66 6.54 99.48 0.65 -10.01 15 7 C -0.50 -29.77 8.79 25.60 0.22 -29.55 15 8 H 0.05 3.08 7.09 -2.91 -0.02 3.06 15 9 C 0.00 -0.07 3.38 29.85 0.10 0.03 15 10 C -0.03 -1.06 2.83 -10.87 -0.03 -1.09 15 11 H 0.06 2.54 8.14 -2.39 -0.02 2.52 15 12 C -0.11 -3.13 6.40 31.71 0.20 -2.92 15 13 C -0.10 -2.28 6.95 31.92 0.22 -2.06 15 14 C -0.11 -3.05 5.93 30.86 0.18 -2.87 15 15 C 0.05 1.92 6.64 47.13 0.31 2.23 15 16 N -0.25 -11.06 10.26 -39.75 -0.41 -11.47 15 17 N -0.79 -27.46 10.39 37.02 0.38 -27.07 15 18 H 0.26 16.06 8.31 -92.71 -0.77 15.29 15 19 H 0.03 1.26 7.20 -2.39 -0.02 1.24 15 20 H 0.01 0.45 7.57 -2.39 -0.02 0.43 15 21 H 0.07 1.94 7.85 -2.39 -0.02 1.92 15 22 H 0.09 2.03 8.14 -2.39 -0.02 2.01 15 23 H 0.08 1.55 8.14 -2.39 -0.02 1.53 15 24 H 0.10 1.57 8.14 -2.39 -0.02 1.55 15 25 H 0.08 1.81 7.34 -2.39 -0.02 1.79 15 26 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 27 H 0.38 10.43 7.36 -213.32 -1.57 8.86 15 28 H 0.42 13.22 8.96 -213.32 -1.91 11.30 15 Total: -1.00 -73.54 231.62 1.46 -72.08 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -2.38 Total: 17.69 kcal Atomic # 6 Polarization: -37.85 SS G_CDS: 1.68 Total: -36.17 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: 0.28 Total: -101.74 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.88 Total: 48.14 kcal Total: -73.54 1.46 -72.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394584089.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.174 kcal (2) G-P(sol) polarization free energy of solvation -73.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds