Wall clock time and date at job start Mon Mar 30 2020 01:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08991 * 109.47351 * 2 1 4 4 C 1.50703 * 109.47013 * 240.00303 * 2 1 3 5 5 H 1.08006 * 119.99916 * 240.00264 * 4 2 1 6 6 C 1.37878 * 120.00380 * 59.99906 * 4 2 1 7 7 N 1.31514 * 119.99621 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00472 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47304 * 89.99888 * 8 6 4 10 10 H 1.48502 * 109.47087 * 210.00664 * 8 6 4 11 11 H 1.48507 * 109.46927 * 329.99931 * 8 6 4 12 12 N 1.46902 * 109.47246 * 120.00699 * 2 1 3 13 13 C 1.46939 * 110.99419 * 301.16566 * 12 2 1 14 14 C 1.50303 * 109.88233 * 172.95412 * 13 12 2 15 15 C 1.29871 * 122.62620 * 343.26657 * 14 13 12 16 16 C 1.50304 * 122.74600 * 0.48333 * 15 14 13 17 17 N 1.45737 * 111.00094 * 63.95035 * 12 2 1 18 18 H 1.08996 * 109.47371 * 299.99860 * 1 2 3 19 19 H 1.09005 * 109.47360 * 60.00010 * 1 2 3 20 20 H 1.09002 * 109.47519 * 179.97438 * 1 2 3 21 21 H 0.97004 * 120.00035 * 179.97438 * 7 6 4 22 22 H 1.09002 * 109.39953 * 293.07024 * 13 12 2 23 23 H 1.08996 * 109.40924 * 52.90478 * 13 12 2 24 24 H 1.08002 * 118.67162 * 163.37286 * 14 13 12 25 25 H 1.07997 * 118.58363 * 180.40411 * 15 14 13 26 26 H 1.09002 * 109.40494 * 223.13823 * 16 15 14 27 27 H 1.08997 * 109.39549 * 103.30650 * 16 15 14 28 28 H 1.00902 * 111.00048 * 290.86741 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 1.3427 -2.1615 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6292 -1.7582 -3.7124 12 7 2.0197 -0.6926 1.1994 13 6 1.5258 -0.0427 2.4212 14 6 1.8959 -0.8656 3.6232 15 6 2.2651 -2.1076 3.5349 16 6 2.3668 -2.8342 2.2231 17 7 1.6305 -2.0970 1.1870 18 1 -0.3634 0.5138 0.8899 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 0.7095 1.1619 -3.4844 22 1 1.9714 0.9481 2.5096 23 1 0.4412 0.0514 2.3683 24 1 1.8514 -0.4059 4.5995 25 1 2.5103 -2.6395 4.4422 26 1 1.9420 -3.8325 2.3282 27 1 3.4147 -2.9150 1.9343 28 1 0.6341 -2.1972 1.3109 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606244378.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:57 Heat of formation + Delta-G solvation = 58.174686 kcal Electronic energy + Delta-G solvation = -11302.337852 eV Core-core repulsion = 9354.934287 eV Total energy + Delta-G solvation = -1947.403565 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.33376 -34.33973 -31.87086 -31.13312 -28.37349 -25.29652 -24.03726 -23.58717 -19.92970 -17.72030 -16.26660 -15.83840 -14.64803 -14.47422 -14.30272 -13.45983 -12.86848 -12.47570 -12.31898 -11.72169 -11.37110 -11.03668 -10.81001 -10.58551 -10.50182 -10.11168 -9.77335 -8.91945 -8.71146 -8.29507 -7.91003 -7.44677 -5.89153 -3.88268 2.51303 3.41103 3.46551 3.52560 4.35888 4.56368 5.15209 5.27482 5.42748 5.50784 5.81844 5.96601 6.12668 6.16970 6.32676 6.64449 6.75261 6.84101 7.02596 7.11244 7.49154 7.61883 7.87627 7.99718 8.27439 8.41720 8.74529 9.21778 9.74271 11.19319 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.063779 B = 0.012756 C = 0.011268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.913785 B = 2194.528679 C = 2484.236591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.209 3.791 3 H 0.047 0.953 4 C -0.471 4.471 5 H 0.072 0.928 6 C 0.049 3.951 7 N -0.905 5.905 8 Si 0.900 3.100 9 H -0.284 1.284 10 H -0.290 1.290 11 H -0.274 1.274 12 N -0.344 5.344 13 C 0.026 3.974 14 C -0.154 4.154 15 C -0.190 4.190 16 C 0.087 3.913 17 N -0.491 5.491 18 H 0.007 0.993 19 H 0.093 0.907 20 H 0.031 0.969 21 H 0.258 0.742 22 H 0.084 0.916 23 H 0.049 0.951 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 -3.736 8.780 9.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.102 3.898 3 H 0.064 0.936 4 C -0.510 4.510 5 H 0.090 0.910 6 C -0.150 4.150 7 N -0.546 5.546 8 Si 0.729 3.271 9 H -0.210 1.210 10 H -0.217 1.217 11 H -0.199 1.199 12 N -0.161 5.161 13 C -0.103 4.103 14 C -0.173 4.173 15 C -0.210 4.210 16 C -0.044 4.044 17 N -0.210 5.210 18 H 0.026 0.974 19 H 0.111 0.889 20 H 0.050 0.950 21 H 0.067 0.933 22 H 0.102 0.898 23 H 0.067 0.933 24 H 0.120 0.880 25 H 0.118 0.882 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.935 -3.777 8.088 8.975 hybrid contribution -1.187 -0.021 0.227 1.209 sum -0.253 -3.798 8.314 9.144 Atomic orbital electron populations 1.22396 1.00779 0.99462 1.00727 1.19498 0.90019 0.94014 0.86233 0.93555 1.21070 1.29483 1.11798 0.88657 0.90990 1.24953 0.95717 0.95309 0.99047 1.69882 1.38090 1.23509 1.23169 0.86458 0.79214 0.79075 0.82371 1.21020 1.21663 1.19915 1.66869 1.52934 0.94681 1.01608 1.21746 0.98688 0.98591 0.91316 1.22298 1.00888 0.95637 0.98474 1.22955 1.01375 0.96914 0.99801 1.21100 1.00974 0.95570 0.86728 1.64901 1.08335 1.03152 1.44615 0.97394 0.88873 0.95003 0.93266 0.89807 0.93344 0.87976 0.88233 0.90717 0.89410 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.32 37.16 0.31 -3.91 15 2 C 0.21 5.34 2.49 -68.86 -0.17 5.17 15 3 H 0.05 1.29 8.14 -51.93 -0.42 0.87 15 4 C -0.47 -13.24 8.25 -34.44 -0.28 -13.52 15 5 H 0.07 2.08 7.57 -52.48 -0.40 1.69 15 6 C 0.05 1.37 5.30 -17.82 -0.09 1.28 15 7 N -0.91 -26.19 11.32 55.43 0.63 -25.56 15 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 15 9 H -0.28 -6.91 7.11 56.52 0.40 -6.50 15 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 15 12 N -0.34 -7.69 5.00 -109.41 -0.55 -8.24 15 13 C 0.03 0.49 5.60 -5.15 -0.03 0.46 15 14 C -0.15 -2.47 10.00 -35.90 -0.36 -2.83 15 15 C -0.19 -2.91 10.00 -35.90 -0.36 -3.27 15 16 C 0.09 1.44 7.05 -5.15 -0.04 1.41 15 17 N -0.49 -10.10 5.94 -11.56 -0.07 -10.17 15 18 H 0.01 0.16 6.23 -51.93 -0.32 -0.16 15 19 H 0.09 2.50 6.07 -51.93 -0.32 2.18 15 20 H 0.03 0.75 6.94 -51.93 -0.36 0.39 15 21 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 22 H 0.08 1.53 8.14 -51.93 -0.42 1.11 15 23 H 0.05 0.92 5.91 -51.93 -0.31 0.61 15 24 H 0.10 1.38 8.06 -52.49 -0.42 0.96 15 25 H 0.10 1.26 8.06 -52.49 -0.42 0.84 15 26 H 0.07 1.05 8.14 -51.93 -0.42 0.62 15 27 H 0.09 1.51 8.14 -51.93 -0.42 1.09 15 28 H 0.31 6.07 7.45 -174.37 -1.30 4.77 15 LS Contribution 227.31 15.07 3.43 3.43 Total: -1.00 -29.14 227.31 -7.28 -36.42 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.67 Total: 2.32 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -1.02 Total: -15.22 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.01 Total: -43.97 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -29.14 -7.28 -36.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606244378.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.595 kcal (2) G-P(sol) polarization free energy of solvation -29.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds