Wall clock time and date at job start Mon Mar 30 2020 01:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08991 * 109.47351 * 2 1 4 4 C 1.50703 * 109.47013 * 240.00303 * 2 1 3 5 5 H 1.08006 * 119.99916 * 240.00264 * 4 2 1 6 6 C 1.37878 * 120.00380 * 59.99906 * 4 2 1 7 7 N 1.31514 * 119.99621 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00472 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47304 * 89.99888 * 8 6 4 10 10 H 1.48502 * 109.47087 * 210.00664 * 8 6 4 11 11 H 1.48507 * 109.46927 * 329.99931 * 8 6 4 12 12 N 1.46902 * 109.47246 * 120.00699 * 2 1 3 13 13 C 1.46939 * 110.99419 * 301.16566 * 12 2 1 14 14 C 1.50303 * 109.88233 * 172.95412 * 13 12 2 15 15 C 1.29871 * 122.62620 * 343.26657 * 14 13 12 16 16 C 1.50304 * 122.74600 * 0.48333 * 15 14 13 17 17 N 1.45737 * 111.00094 * 63.95035 * 12 2 1 18 18 H 1.08996 * 109.47371 * 299.99860 * 1 2 3 19 19 H 1.09005 * 109.47360 * 60.00010 * 1 2 3 20 20 H 1.09002 * 109.47519 * 179.97438 * 1 2 3 21 21 H 0.97004 * 120.00035 * 179.97438 * 7 6 4 22 22 H 1.09002 * 109.39953 * 293.07024 * 13 12 2 23 23 H 1.08996 * 109.40924 * 52.90478 * 13 12 2 24 24 H 1.08002 * 118.67162 * 163.37286 * 14 13 12 25 25 H 1.07997 * 118.58363 * 180.40411 * 15 14 13 26 26 H 1.09002 * 109.40494 * 223.13823 * 16 15 14 27 27 H 1.08997 * 109.39549 * 103.30650 * 16 15 14 28 28 H 1.00902 * 111.00048 * 290.86741 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 1.3427 -2.1615 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6292 -1.7582 -3.7124 12 7 2.0197 -0.6926 1.1994 13 6 1.5258 -0.0427 2.4212 14 6 1.8959 -0.8656 3.6232 15 6 2.2651 -2.1076 3.5349 16 6 2.3668 -2.8342 2.2231 17 7 1.6305 -2.0970 1.1870 18 1 -0.3634 0.5138 0.8899 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 0.7095 1.1619 -3.4844 22 1 1.9714 0.9481 2.5096 23 1 0.4412 0.0514 2.3683 24 1 1.8514 -0.4059 4.5995 25 1 2.5103 -2.6395 4.4422 26 1 1.9420 -3.8325 2.3282 27 1 3.4147 -2.9150 1.9343 28 1 0.6341 -2.1972 1.3109 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606244378.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:56 Heat of formation + Delta-G solvation = 38.626919 kcal Electronic energy + Delta-G solvation = -11303.185507 eV Core-core repulsion = 9354.934287 eV Total energy + Delta-G solvation = -1948.251220 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.88123 -36.12749 -33.77241 -32.56730 -30.18792 -27.34044 -25.71229 -25.03092 -21.79978 -19.16260 -18.21810 -17.43642 -16.43452 -16.16622 -15.85187 -15.09925 -14.50720 -14.14094 -13.97017 -13.56861 -12.87499 -12.85374 -12.53636 -12.43309 -12.30553 -12.09551 -11.69807 -10.95589 -10.44576 -10.02455 -9.44921 -9.14704 -8.03775 -6.09885 1.30366 1.46799 1.46876 1.58668 2.49599 2.78165 3.26745 3.81398 3.96645 4.21945 4.45485 4.50944 4.73178 4.79482 4.82316 4.86563 4.99842 5.06997 5.44220 5.56260 5.75309 5.83056 5.91583 6.23811 6.29494 6.58788 6.89738 7.08194 7.56442 9.03406 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.063779 B = 0.012756 C = 0.011268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.913785 B = 2194.528679 C = 2484.236591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.213 3.787 3 H 0.014 0.986 4 C -0.485 4.485 5 H 0.059 0.941 6 C 0.003 3.997 7 N -0.929 5.929 8 Si 0.962 3.038 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.360 5.360 13 C 0.024 3.976 14 C -0.167 4.167 15 C -0.182 4.182 16 C 0.081 3.919 17 N -0.510 5.510 18 H 0.028 0.972 19 H 0.065 0.935 20 H 0.032 0.968 21 H 0.259 0.741 22 H 0.081 0.919 23 H 0.045 0.955 24 H 0.133 0.867 25 H 0.136 0.864 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.246 -4.925 9.843 11.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.105 3.895 3 H 0.032 0.968 4 C -0.524 4.524 5 H 0.077 0.923 6 C -0.194 4.194 7 N -0.571 5.571 8 Si 0.788 3.212 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.176 5.176 13 C -0.105 4.105 14 C -0.185 4.185 15 C -0.201 4.201 16 C -0.049 4.049 17 N -0.230 5.230 18 H 0.047 0.953 19 H 0.084 0.916 20 H 0.051 0.949 21 H 0.068 0.932 22 H 0.100 0.900 23 H 0.063 0.937 24 H 0.151 0.849 25 H 0.154 0.846 26 H 0.123 0.877 27 H 0.097 0.903 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.151 -4.972 9.171 10.495 hybrid contribution -1.232 0.320 -0.051 1.274 sum -0.082 -4.652 9.120 10.238 Atomic orbital electron populations 1.22161 0.99946 0.99297 1.00334 1.19203 0.90492 0.92477 0.87299 0.96786 1.21243 1.29515 1.11545 0.90079 0.92308 1.25686 0.95915 0.96003 1.01775 1.70006 1.38808 1.24527 1.23741 0.85497 0.78681 0.78064 0.78946 1.20413 1.21190 1.19700 1.66643 1.53440 0.95880 1.01618 1.21770 0.98456 0.99044 0.91192 1.22384 1.01970 0.95833 0.98318 1.23119 1.00126 0.96651 1.00235 1.21249 1.00238 0.96714 0.86662 1.64796 1.08812 1.02119 1.47286 0.95281 0.91632 0.94885 0.93232 0.90031 0.93684 0.84942 0.84602 0.87674 0.90264 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.72 8.32 71.98 0.60 -7.12 15 2 C 0.21 11.07 2.49 44.17 0.11 11.18 15 3 H 0.01 0.83 8.14 -2.39 -0.02 0.81 15 4 C -0.49 -27.60 8.25 25.60 0.21 -27.39 15 5 H 0.06 3.44 7.57 -2.91 -0.02 3.41 15 6 C 0.00 0.17 5.30 84.65 0.45 0.62 15 7 N -0.93 -54.48 11.32 21.45 0.24 -54.23 15 8 Si 0.96 45.38 29.54 68.60 2.03 47.40 15 9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 10 H -0.29 -13.21 7.11 99.48 0.71 -12.50 15 11 H -0.27 -12.65 7.11 99.48 0.71 -11.94 15 12 N -0.36 -16.00 5.00 -500.05 -2.50 -18.50 15 13 C 0.02 0.90 5.60 85.42 0.48 1.37 15 14 C -0.17 -4.86 10.00 26.69 0.27 -4.60 15 15 C -0.18 -4.91 10.00 26.69 0.27 -4.64 15 16 C 0.08 2.50 7.05 85.43 0.60 3.10 15 17 N -0.51 -20.48 5.94 -190.48 -1.13 -21.61 15 18 H 0.03 1.25 6.23 -2.39 -0.01 1.23 15 19 H 0.06 3.57 6.07 -2.38 -0.01 3.56 15 20 H 0.03 1.55 6.94 -2.39 -0.02 1.53 15 21 H 0.26 14.47 8.31 -92.71 -0.77 13.70 15 22 H 0.08 2.96 8.14 -2.39 -0.02 2.94 15 23 H 0.05 1.66 5.91 -2.39 -0.01 1.65 15 24 H 0.13 3.07 8.06 -2.91 -0.02 3.05 15 25 H 0.14 2.75 8.06 -2.91 -0.02 2.73 15 26 H 0.11 2.60 8.14 -2.39 -0.02 2.58 15 27 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 28 H 0.31 11.88 7.45 -204.60 -1.53 10.35 15 Total: -1.00 -62.09 227.31 1.24 -60.85 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -0.38 Total: 13.57 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 2.98 Total: -27.48 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -3.39 Total: -94.34 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -62.09 1.24 -60.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606244378.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.478 kcal (2) G-P(sol) polarization free energy of solvation -62.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds