Wall clock time and date at job start Mon Mar 30 2020 01:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00188 * 2 1 4 4 H 1.48497 * 109.46860 * 240.00008 * 3 2 1 5 5 H 1.48498 * 109.46832 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47305 * 119.99565 * 3 2 1 7 7 C 1.38815 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99967 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00029 * 0.02562 * 7 2 1 10 10 C 1.49390 * 127.15149 * 359.96951 * 9 7 2 11 11 C 1.56295 * 106.41433 * 188.95691 * 10 9 7 12 12 C 1.52061 * 100.75742 * 23.63387 * 11 10 9 13 13 H 1.09002 * 111.31425 * 74.79600 * 12 11 10 14 14 C 1.51158 * 122.55367 * 210.16547 * 12 11 10 15 15 N 1.49426 * 105.21340 * 139.64044 * 14 12 11 16 16 C 1.50057 * 107.82173 * 352.81089 * 15 14 12 17 17 C 1.42050 * 126.99816 * 179.87214 * 9 7 2 18 18 H 1.08996 * 107.65233 * 255.20973 * 17 9 7 19 19 H 0.96995 * 119.99685 * 0.02562 * 1 2 3 20 20 H 1.08999 * 110.06891 * 69.71571 * 10 9 7 21 21 H 1.09005 * 110.06735 * 308.19433 * 10 9 7 22 22 H 1.09002 * 111.15647 * 265.76240 * 11 10 9 23 23 H 1.09000 * 111.16139 * 141.50653 * 11 10 9 24 24 H 1.08997 * 110.29622 * 20.69909 * 14 12 11 25 25 H 1.09001 * 110.28954 * 258.57584 * 14 12 11 26 26 H 1.00904 * 110.99232 * 231.03777 * 15 14 12 27 27 H 1.09002 * 110.83420 * 93.80419 * 16 15 14 28 28 H 1.09000 * 110.83761 * 217.18563 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1567 -2.5741 0.0006 11 6 -0.4105 -4.0985 0.2340 12 6 0.8820 -4.4985 0.9281 13 1 0.9009 -4.1510 1.9611 14 6 1.4779 -5.8820 0.8031 15 7 2.9509 -5.6645 0.6767 16 6 3.1879 -4.1883 0.5489 17 6 1.8807 -3.6956 -0.0015 18 1 1.7642 -4.1026 -1.0059 19 1 -0.4849 0.8400 -0.0004 20 1 -0.5721 -2.2685 -0.9596 21 1 -0.6066 -1.9925 0.8054 22 1 -0.5289 -4.6270 -0.7120 23 1 -1.2715 -4.2593 0.8828 24 1 1.0917 -6.3811 -0.0855 25 1 1.2577 -6.4703 1.6939 26 1 3.3225 -6.1607 -0.1195 27 1 3.3913 -3.7426 1.5225 28 1 4.0024 -3.9852 -0.1464 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686249185.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:06 Heat of formation + Delta-G solvation = 47.535657 kcal Electronic energy + Delta-G solvation = -11434.258325 eV Core-core repulsion = 9486.393417 eV Total energy + Delta-G solvation = -1947.864908 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.37561 -34.81162 -32.16148 -30.16761 -27.17432 -26.75465 -24.15280 -21.24337 -19.69107 -19.51442 -16.51547 -15.80539 -15.37306 -14.43431 -13.80289 -13.54509 -12.75349 -12.27434 -11.87154 -11.72556 -11.41022 -11.10376 -10.87391 -10.73954 -10.21150 -10.06144 -9.92556 -9.70757 -9.28636 -8.66441 -8.16702 -6.84146 -5.74266 -3.08246 3.40238 3.44323 3.45583 4.45372 4.58651 4.77646 5.29471 5.47655 5.61771 5.81065 5.92661 6.00999 6.05955 6.16698 6.28104 6.33276 6.59982 6.64541 6.76304 6.96071 7.05482 7.49079 7.59385 7.66870 7.76386 8.21849 9.14292 9.81300 10.50894 11.38821 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.063191 B = 0.013695 C = 0.011596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.993587 B = 2044.040907 C = 2414.023981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.581 5.581 10 C 0.176 3.824 11 C -0.128 4.128 12 C -0.153 4.153 13 H 0.080 0.920 14 C 0.061 3.939 15 N -0.682 5.682 16 C 0.056 3.944 17 C 0.141 3.859 18 H 0.002 0.998 19 H 0.254 0.746 20 H 0.035 0.965 21 H 0.066 0.934 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.331 0.669 27 H 0.079 0.921 28 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.631 -8.147 0.291 8.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.360 4.360 8 H 0.097 0.903 9 N -0.305 5.305 10 C 0.052 3.948 11 C -0.167 4.167 12 C -0.174 4.174 13 H 0.099 0.901 14 C -0.068 4.068 15 N -0.310 5.310 16 C -0.073 4.073 17 C 0.029 3.971 18 H 0.019 0.981 19 H 0.064 0.936 20 H 0.053 0.947 21 H 0.084 0.916 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.145 0.855 27 H 0.097 0.903 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.734 -7.932 0.989 8.179 hybrid contribution 0.067 1.075 -0.968 1.448 sum 1.801 -6.857 0.021 7.090 Atomic orbital electron populations 1.69897 1.04976 1.25323 1.56765 1.24817 0.95704 0.97772 1.02043 0.86189 0.78486 0.83087 0.77956 1.21134 1.21546 1.21056 1.19025 0.90334 0.82418 1.44193 0.90312 1.43447 1.01781 0.99254 1.85969 1.22079 0.83201 0.88692 1.00793 1.22463 0.95839 0.99648 0.98733 1.23032 0.98255 0.95283 1.00794 0.90123 1.21977 0.87786 0.96686 1.00338 1.63261 1.13215 1.08615 1.45943 1.22108 0.96888 0.87134 1.01177 1.21049 0.93047 0.88116 0.94908 0.98121 0.93600 0.94658 0.91561 0.92672 0.92187 0.93637 0.91199 0.85538 0.90269 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.32 10.55 55.49 0.59 -26.74 15 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 15 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 15 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 7 C -0.23 -6.53 10.31 -15.06 -0.16 -6.69 15 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 15 9 N -0.58 -15.21 3.26 -162.65 -0.53 -15.74 15 10 C 0.18 4.36 5.56 -0.67 0.00 4.36 15 11 C -0.13 -2.49 6.68 -25.44 -0.17 -2.66 15 12 C -0.15 -2.93 3.32 -89.10 -0.30 -3.23 15 13 H 0.08 1.67 8.14 -51.93 -0.42 1.25 15 14 C 0.06 0.97 7.33 -3.34 -0.02 0.95 15 15 N -0.68 -11.00 7.55 -111.90 -0.85 -11.84 15 16 C 0.06 1.05 7.45 -3.47 -0.03 1.03 15 17 C 0.14 3.06 3.09 -68.76 -0.21 2.84 15 18 H 0.00 0.04 7.92 -51.93 -0.41 -0.37 15 19 H 0.25 7.29 8.31 -40.82 -0.34 6.95 15 20 H 0.04 0.94 8.00 -51.93 -0.42 0.52 15 21 H 0.07 1.80 7.04 -51.93 -0.37 1.44 15 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.06 1.05 8.14 -51.93 -0.42 0.62 15 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.33 4.59 8.94 -39.29 -0.35 4.24 15 27 H 0.08 1.57 8.14 -51.93 -0.42 1.15 15 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 LS Contribution 226.50 15.07 3.41 3.41 Total: -1.00 -29.86 226.50 -7.43 -37.30 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -4.05 Total: 0.10 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -0.98 Total: -3.68 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.79 Total: -54.32 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -29.86 -7.43 -37.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686249185.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.832 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds