Wall clock time and date at job start Mon Mar 30 2020 02:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.35143 * 127.24759 * 89.70473 * 11 10 9 13 13 C 1.37804 * 114.75762 * 179.86854 * 12 11 10 14 14 N 1.30081 * 116.88611 * 0.44994 * 13 12 11 15 15 S 1.69606 * 107.14812 * 359.75574 * 14 13 12 16 16 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 17 17 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 18 18 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 19 19 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 20 20 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 21 21 H 1.08004 * 122.62036 * 0.04476 * 12 11 10 22 22 H 1.08003 * 121.55648 * 180.21155 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.0775 -5.6731 -1.0742 13 6 0.4087 -6.8404 -0.7757 14 7 0.2471 -7.1200 0.4844 15 16 0.9709 -5.8684 1.3711 16 1 -0.4850 0.8401 0.0004 17 1 0.6239 -2.5567 0.8903 18 1 0.6246 -2.5571 -0.8897 19 1 2.8718 -3.6044 -0.8895 20 1 2.8718 -3.6044 0.8904 21 1 1.2591 -5.3492 -2.0884 22 1 0.0327 -7.4908 -1.5517 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719873445.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:49 Heat of formation + Delta-G solvation = 0.957089 kcal Electronic energy + Delta-G solvation = -8566.247137 eV Core-core repulsion = 6825.563545 eV Total energy + Delta-G solvation = -1740.683592 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.67161 -36.14794 -34.06748 -30.88686 -27.55704 -25.09791 -22.93104 -20.66029 -18.81900 -18.28525 -16.55428 -16.40082 -15.15576 -15.10638 -14.50332 -13.97346 -13.88869 -13.17883 -12.93909 -12.56256 -12.39585 -11.82784 -11.61144 -11.37923 -11.27552 -10.57729 -10.22331 -9.66214 -8.20936 -6.32862 -0.17211 0.59251 1.00928 1.42296 1.42971 1.55920 1.64503 2.41565 3.13241 3.77407 4.21172 4.39603 4.53830 4.70972 4.95145 5.02921 5.11479 5.46587 5.60983 5.72060 5.80442 6.17931 6.83647 7.37112 8.91066 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.095312 B = 0.008743 C = 0.008714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 293.703029 B = 3201.807516 C = 3212.363716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.035 3.965 10 C -0.034 4.034 11 C -0.150 4.150 12 C -0.224 4.224 13 C 0.102 3.898 14 N -0.496 5.496 15 S 0.216 5.784 16 H 0.264 0.736 17 H -0.010 1.010 18 H -0.004 1.004 19 H 0.089 0.911 20 H 0.075 0.925 21 H 0.174 0.826 22 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.601 -9.212 -1.804 10.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.003 4.003 10 C -0.073 4.073 11 C -0.280 4.280 12 C -0.257 4.257 13 C -0.096 4.096 14 N -0.317 5.317 15 S 0.367 5.633 16 H 0.072 0.928 17 H 0.009 0.991 18 H 0.015 0.985 19 H 0.107 0.893 20 H 0.093 0.907 21 H 0.192 0.808 22 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.010 -9.911 0.228 10.361 hybrid contribution 0.256 1.487 -1.727 2.293 sum 3.266 -8.424 -1.499 9.158 Atomic orbital electron populations 1.70113 1.07917 1.27795 1.51505 1.25989 0.95723 1.03461 0.94637 0.85369 0.79229 0.78622 0.77649 1.18209 1.20478 1.20635 1.21683 0.93844 0.91764 1.50715 0.91360 1.18963 0.93970 0.92092 0.95269 1.20162 0.96914 0.86946 1.03288 1.25906 1.02126 1.01541 0.98408 1.21653 1.05374 0.96652 1.02067 1.23356 0.95667 0.96495 0.94050 1.76783 1.24729 1.21094 1.09047 1.83975 1.50454 1.12883 1.15978 0.92758 0.99119 0.98528 0.89257 0.90691 0.80849 0.76261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 13.29 21.45 0.28 -55.83 14 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 14 3 Si 0.97 43.18 29.54 68.60 2.03 45.21 14 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 14 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 14 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 14 7 C -0.54 -29.75 9.11 25.60 0.23 -29.52 14 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 14 9 C 0.04 1.80 4.95 29.85 0.15 1.95 14 10 C -0.03 -1.32 5.73 29.85 0.17 -1.15 14 11 C -0.15 -5.27 5.85 24.97 0.15 -5.12 14 12 C -0.22 -6.63 10.17 21.45 0.22 -6.41 14 13 C 0.10 2.72 11.27 84.85 0.96 3.68 14 14 N -0.50 -15.93 12.09 -62.61 -0.76 -16.69 14 15 S 0.22 7.29 23.72 -56.49 -1.34 5.95 14 16 H 0.26 14.87 8.31 -92.71 -0.77 14.10 14 17 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 14 18 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 14 19 H 0.09 3.22 8.14 -2.39 -0.02 3.20 14 20 H 0.07 2.81 8.14 -2.39 -0.02 2.79 14 21 H 0.17 4.36 8.06 -2.91 -0.02 4.34 14 22 H 0.22 3.78 8.06 -2.91 -0.02 3.75 14 Total: -1.00 -63.58 217.23 3.75 -59.82 By element: Atomic # 1 Polarization: -3.56 SS G_CDS: 1.20 Total: -2.35 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 2.33 Total: -36.11 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -0.47 Total: -72.52 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 7.29 SS G_CDS: -1.34 Total: 5.95 kcal Total: -63.58 3.75 -59.82 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719873445.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.781 kcal (2) G-P(sol) polarization free energy of solvation -63.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds