Wall clock time and date at job start Mon Mar 30 2020 02:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41375 * 126.80544 * 2 1 4 4 C 1.35450 * 103.98779 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.77526 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47007 * 25.00689 * 5 4 3 7 7 O 1.42900 * 109.46705 * 145.00419 * 5 4 3 8 8 C 1.50695 * 109.46959 * 264.99990 * 5 4 3 9 9 H 1.08000 * 120.00704 * 0.02562 * 8 5 4 10 10 C 1.37881 * 119.99844 * 180.02562 * 8 5 4 11 11 N 1.31516 * 120.00293 * 180.02562 * 10 8 5 12 12 Si 1.86801 * 119.99725 * 359.97438 * 10 8 5 13 13 H 1.48505 * 109.46627 * 90.00362 * 12 10 8 14 14 H 1.48507 * 109.47047 * 209.99639 * 12 10 8 15 15 H 1.48501 * 109.47479 * 330.00154 * 12 10 8 16 16 O 1.34034 * 106.44531 * 0.02562 * 4 3 2 17 17 N 1.20925 * 111.56886 * 359.97438 * 16 4 3 18 18 H 1.09005 * 109.46758 * 269.97205 * 1 2 3 19 19 H 1.09001 * 109.46799 * 29.97065 * 1 2 3 20 20 H 1.09000 * 109.47005 * 149.97352 * 1 2 3 21 21 H 1.08002 * 128.00212 * 359.97438 * 3 2 1 22 22 H 0.96695 * 114.00101 * 60.00060 * 7 5 4 23 23 H 0.96992 * 120.00006 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9023 1.3695 -0.0014 6 1 4.7445 2.3566 0.4330 7 8 5.8720 0.6587 0.7709 8 6 5.3974 1.5167 -1.4170 9 1 4.8277 1.1000 -2.2345 10 6 6.5778 2.1834 -1.6687 11 7 7.0097 2.3123 -2.9042 12 14 7.5627 2.9047 -0.2548 13 1 8.5294 1.8926 0.2419 14 1 8.3005 4.1040 -0.7267 15 1 6.6416 3.2907 0.8441 16 8 3.4537 -0.7254 -0.0015 17 7 2.2868 -1.0424 -0.0010 18 1 -0.3633 -0.0005 1.0277 19 1 -0.3633 0.8903 -0.5134 20 1 -0.3633 -0.8897 -0.5142 21 1 2.0710 2.1742 -0.0004 22 1 6.0626 -0.2301 0.4413 23 1 7.8398 2.7816 -3.0812 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535789457.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:37 Heat of formation + Delta-G solvation = 3.293203 kcal Electronic energy + Delta-G solvation = -10895.873997 eV Core-core repulsion = 8712.538835 eV Total energy + Delta-G solvation = -2183.335162 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -44.23427 -36.38118 -34.23953 -32.47524 -31.41325 -28.29888 -27.45564 -23.11185 -22.35595 -19.44780 -17.80243 -16.89942 -16.55063 -15.04292 -14.82391 -13.96803 -13.22036 -13.14302 -12.94935 -12.60144 -12.54688 -11.88626 -11.30924 -10.92444 -10.73803 -10.21769 -9.57294 -9.49453 -9.17548 -8.82292 -8.42944 -6.29788 -4.46196 2.16944 2.80518 3.34372 3.38835 3.48899 3.81980 4.33880 4.66352 4.91153 5.07741 5.60077 5.62384 5.67518 5.72098 5.90131 6.10403 6.28999 6.63398 6.89248 7.21014 8.07834 8.55874 8.74504 8.90176 9.27588 10.79727 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.072470 B = 0.011983 C = 0.011487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.275058 B = 2336.016278 C = 2436.970976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.009 3.991 3 C -0.260 4.260 4 C 0.007 3.993 5 C 0.268 3.732 6 H 0.096 0.904 7 O -0.578 6.578 8 C -0.566 4.566 9 H 0.079 0.921 10 C 0.088 3.912 11 N -0.881 5.881 12 Si 0.913 3.087 13 H -0.274 1.274 14 H -0.300 1.300 15 H -0.266 1.266 16 O 0.091 5.909 17 N -0.386 5.386 18 H 0.074 0.926 19 H 0.077 0.923 20 H 0.070 0.930 21 H 0.165 0.835 22 H 0.373 0.627 23 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.423 -1.074 5.957 9.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.150 4.150 3 C -0.282 4.282 4 C -0.057 4.057 5 C 0.209 3.791 6 H 0.113 0.887 7 O -0.385 6.385 8 C -0.603 4.603 9 H 0.097 0.903 10 C -0.118 4.118 11 N -0.516 5.516 12 Si 0.742 3.258 13 H -0.199 1.199 14 H -0.228 1.228 15 H -0.191 1.191 16 O 0.030 5.970 17 N -0.095 5.095 18 H 0.092 0.908 19 H 0.096 0.904 20 H 0.089 0.911 21 H 0.182 0.818 22 H 0.221 0.779 23 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.501 -1.788 6.179 9.881 hybrid contribution 0.366 0.795 0.081 0.879 sum -7.134 -0.993 6.260 9.544 Atomic orbital electron populations 1.20065 0.86664 1.03224 1.02662 1.23499 0.98541 0.89425 1.03554 1.22263 0.91287 1.00721 1.13921 1.26135 1.00386 0.82973 0.96189 1.18829 0.77424 0.89414 0.93436 0.88668 1.86399 1.61947 1.32385 1.57732 1.21287 1.08934 1.39521 0.90586 0.90322 1.24968 0.96736 0.93957 0.96158 1.69922 1.21870 1.40365 1.19463 0.86258 0.80236 0.77822 0.81524 1.19925 1.22807 1.19112 1.84727 1.21112 1.23497 1.67711 1.73736 0.89745 1.24475 1.21555 0.90764 0.90391 0.91078 0.81761 0.77925 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.47 36.01 0.38 -0.50 14 2 C 0.01 0.16 7.33 -82.10 -0.60 -0.44 14 3 C -0.26 -4.92 11.06 -39.38 -0.44 -5.36 14 4 C 0.01 0.16 6.29 -35.30 -0.22 -0.07 14 5 C 0.27 6.17 2.80 -29.03 -0.08 6.09 14 6 H 0.10 2.15 7.20 -51.93 -0.37 1.77 14 7 O -0.58 -12.82 11.02 -38.31 -0.42 -13.24 14 8 C -0.57 -15.32 9.33 -34.44 -0.32 -15.64 14 9 H 0.08 2.35 7.98 -52.49 -0.42 1.93 14 10 C 0.09 2.44 5.47 -17.82 -0.10 2.34 14 11 N -0.88 -25.82 13.96 55.43 0.77 -25.05 14 12 Si 0.91 21.85 26.18 -169.99 -4.45 17.40 14 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 14 14 H -0.30 -7.12 7.11 56.52 0.40 -6.72 14 15 H -0.27 -6.20 6.54 56.52 0.37 -5.83 14 16 O 0.09 1.96 11.13 14.11 0.16 2.12 14 17 N -0.39 -7.89 12.07 33.42 0.40 -7.48 14 18 H 0.07 0.81 8.14 -51.93 -0.42 0.39 14 19 H 0.08 0.84 8.14 -51.93 -0.42 0.42 14 20 H 0.07 0.85 8.14 -51.93 -0.42 0.43 14 21 H 0.16 2.68 8.06 -52.49 -0.42 2.25 14 22 H 0.37 7.34 8.97 45.56 0.41 7.74 14 23 H 0.27 7.38 8.31 -40.82 -0.34 7.04 14 LS Contribution 212.80 15.07 3.21 3.21 Total: -1.00 -30.39 212.80 -2.95 -33.34 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -1.24 Total: 3.29 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.38 Total: -13.58 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 1.18 Total: -32.53 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.27 Total: -11.12 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.45 Total: 17.40 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -30.39 -2.95 -33.34 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535789457.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.635 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds