Wall clock time and date at job start Mon Mar 30 2020 01:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 115.55257 * 2 1 4 4 C 1.53005 * 117.49630 * 145.66647 * 2 1 3 5 5 C 1.52994 * 117.49908 * 214.98314 * 4 2 1 6 6 C 1.50702 * 109.47435 * 69.93759 * 5 4 2 7 7 H 1.08000 * 119.99696 * 359.72871 * 6 5 4 8 8 C 1.37879 * 120.00147 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99909 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99822 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47305 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47038 * 119.99966 * 10 8 6 13 13 H 1.48500 * 109.47108 * 239.99829 * 10 8 6 14 14 C 1.52994 * 60.03143 * 107.48061 * 4 2 1 15 15 C 1.53001 * 117.49903 * 107.50096 * 14 4 2 16 16 C 1.53005 * 117.50230 * 252.52361 * 14 4 2 17 17 H 1.09001 * 109.47740 * 325.72690 * 1 2 3 18 18 H 1.09006 * 109.46830 * 85.72659 * 1 2 3 19 19 H 1.09000 * 109.47339 * 205.72131 * 1 2 3 20 20 H 1.08994 * 109.47321 * 154.27224 * 3 2 1 21 21 H 1.09001 * 109.46776 * 274.27864 * 3 2 1 22 22 H 1.09004 * 109.46781 * 34.27306 * 3 2 1 23 23 H 1.09002 * 117.49832 * 359.97438 * 4 2 1 24 24 H 1.09002 * 109.47395 * 309.93604 * 5 4 2 25 25 H 1.09005 * 109.47210 * 189.94110 * 5 4 2 26 26 H 0.97002 * 119.99357 * 180.02562 * 9 8 6 27 27 H 1.09002 * 109.46980 * 175.39239 * 15 14 4 28 28 H 1.08997 * 109.47450 * 295.38959 * 15 14 4 29 29 H 1.08999 * 109.46884 * 55.39319 * 15 14 4 30 30 H 1.09001 * 109.46752 * 8.60528 * 16 14 4 31 31 H 1.08993 * 109.47785 * 128.60597 * 16 14 4 32 32 H 1.09000 * 109.47134 * 248.61066 * 16 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1207 0.7655 5 6 3.5488 -0.7755 1.4719 6 6 3.2650 0.1227 2.6483 7 1 2.2505 0.4212 2.8673 8 6 4.3012 0.5682 3.4413 9 7 5.5372 0.2089 3.1714 10 14 3.9493 1.6809 4.8999 11 1 2.4887 1.9343 4.9881 12 1 4.4132 1.0229 6.1477 13 1 4.6661 2.9694 4.7238 14 6 2.2367 -1.1222 -0.7645 15 6 3.5495 -0.7782 -1.4710 16 6 1.3588 -2.1577 -1.4702 17 1 -0.3634 0.8492 0.5787 18 1 -0.3633 0.0766 -1.0249 19 1 -0.3634 -0.9258 0.4460 20 1 3.1818 1.3089 0.4461 21 1 2.2774 1.7412 -1.0248 22 1 1.5804 2.0744 0.5788 23 1 1.6111 -1.8578 1.2694 24 1 4.2125 -0.2631 0.7754 25 1 4.0256 -1.6915 1.8208 26 1 6.2661 0.5221 3.7296 27 1 3.4249 -0.8973 -2.5473 28 1 3.8222 0.2535 -1.2488 29 1 4.3365 -1.4457 -1.1202 30 1 0.7294 -2.6611 -0.7363 31 1 0.7297 -1.6590 -2.2073 32 1 1.9921 -2.8910 -1.9696 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535825505.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:46 Heat of formation + Delta-G solvation = -19.687637 kcal Electronic energy + Delta-G solvation = -11515.673818 eV Core-core repulsion = 9668.434232 eV Total energy + Delta-G solvation = -1847.239586 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.40009 -35.00818 -31.89270 -31.26492 -29.32068 -27.49153 -26.95392 -24.51360 -19.79924 -18.69642 -18.11062 -16.52329 -16.04453 -15.45978 -14.88700 -14.61642 -13.96082 -13.54750 -13.15513 -13.14844 -13.10691 -12.89397 -12.71227 -12.62570 -12.53894 -12.41716 -12.15174 -11.47697 -11.43878 -11.19200 -10.54485 -9.93863 -9.87352 -8.13516 -6.21001 1.38450 1.39468 1.51942 2.42351 2.97911 3.18862 3.94077 4.04012 4.06592 4.37625 4.43432 4.73043 4.82330 4.88992 4.92730 5.01338 5.10908 5.15650 5.16782 5.19691 5.23628 5.27553 5.35874 5.48064 5.54283 5.63962 5.81744 5.84103 5.94489 6.35175 6.93318 7.45516 8.97761 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.052087 B = 0.012517 C = 0.011394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.436850 B = 2236.466873 C = 2456.885677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.115 4.115 3 C -0.109 4.109 4 C -0.139 4.139 5 C 0.055 3.945 6 C -0.508 4.508 7 H 0.054 0.946 8 C -0.001 4.001 9 N -0.936 5.936 10 Si 0.954 3.046 11 H -0.264 1.264 12 H -0.281 1.281 13 H -0.280 1.280 14 C -0.127 4.127 15 C -0.111 4.111 16 C -0.103 4.103 17 H 0.054 0.946 18 H 0.072 0.928 19 H 0.054 0.946 20 H 0.048 0.952 21 H 0.059 0.941 22 H 0.049 0.951 23 H 0.080 0.920 24 H 0.010 0.990 25 H -0.021 1.021 26 H 0.260 0.740 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.445 -0.481 -8.069 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.115 4.115 3 C -0.166 4.166 4 C -0.157 4.157 5 C 0.018 3.982 6 C -0.546 4.546 7 H 0.072 0.928 8 C -0.198 4.198 9 N -0.577 5.577 10 Si 0.780 3.220 11 H -0.188 1.188 12 H -0.207 1.207 13 H -0.206 1.206 14 C -0.128 4.128 15 C -0.168 4.168 16 C -0.159 4.159 17 H 0.073 0.927 18 H 0.091 0.909 19 H 0.073 0.927 20 H 0.067 0.933 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.098 0.902 24 H 0.028 0.972 25 H -0.003 1.003 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.288 -0.459 -8.013 11.538 hybrid contribution 0.456 0.446 1.161 1.325 sum -7.832 -0.013 -6.852 10.407 Atomic orbital electron populations 1.21270 0.91232 1.01525 1.01996 1.21677 0.94904 0.90967 1.03978 1.21286 1.00751 0.94363 1.00227 1.22697 0.99574 1.00851 0.92622 1.18567 0.91542 0.93962 0.94144 1.21479 0.93009 1.28480 1.11657 0.92817 1.25860 0.94965 0.98286 1.00692 1.70103 0.99794 1.47149 1.40681 0.85549 0.78589 0.78610 0.79250 1.18792 1.20742 1.20556 1.21913 0.97971 0.99973 0.92893 1.21288 0.94888 1.00836 0.99791 1.21265 0.98293 0.96678 0.99709 0.92676 0.90878 0.92733 0.93264 0.92241 0.93170 0.90152 0.97173 1.00296 0.93094 0.90619 0.93362 0.94085 0.92746 0.90971 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.02 8.88 71.98 0.64 -2.38 16 2 C -0.12 -4.20 2.65 -52.16 -0.14 -4.34 16 3 C -0.11 -4.20 7.71 71.98 0.56 -3.65 16 4 C -0.14 -5.98 4.98 -10.80 -0.05 -6.04 16 5 C 0.05 2.93 4.21 29.85 0.13 3.06 16 6 C -0.51 -29.00 7.66 25.60 0.20 -28.80 16 7 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 8 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 9 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 10 Si 0.95 45.17 29.54 68.60 2.03 47.20 16 11 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 14 C -0.13 -4.42 2.70 -52.16 -0.14 -4.56 16 15 C -0.11 -3.83 8.24 71.98 0.59 -3.24 16 16 C -0.10 -2.73 8.82 71.98 0.63 -2.09 16 17 H 0.05 1.58 7.92 -2.39 -0.02 1.57 16 18 H 0.07 1.77 8.02 -2.38 -0.02 1.76 16 19 H 0.05 1.54 7.78 -2.39 -0.02 1.52 16 20 H 0.05 2.28 4.78 -2.39 -0.01 2.27 16 21 H 0.06 1.97 7.90 -2.39 -0.02 1.95 16 22 H 0.05 1.85 7.92 -2.38 -0.02 1.83 16 23 H 0.08 3.41 7.96 -2.39 -0.02 3.39 16 24 H 0.01 0.57 5.24 -2.39 -0.01 0.56 16 25 H -0.02 -1.27 8.14 -2.38 -0.02 -1.29 16 26 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 27 H 0.07 2.09 8.05 -2.39 -0.02 2.07 16 28 H 0.05 1.79 5.53 -2.39 -0.01 1.78 16 29 H 0.04 1.52 7.95 -2.39 -0.02 1.50 16 30 H 0.05 1.42 7.78 -2.39 -0.02 1.40 16 31 H 0.07 1.63 8.02 -2.39 -0.02 1.61 16 32 H 0.06 1.55 8.09 -2.39 -0.02 1.53 16 Total: -1.00 -63.12 252.57 6.25 -56.87 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.06 Total: 4.92 kcal Atomic # 6 Polarization: -54.53 SS G_CDS: 2.87 Total: -51.66 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.28 Total: -57.34 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -63.12 6.25 -56.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535825505.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.186 kcal (2) G-P(sol) polarization free energy of solvation -63.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds