Wall clock time and date at job start Mon Mar 30 2020 01:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46811 * 294.99812 * 3 2 1 5 5 C 1.52996 * 109.47179 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47201 * 59.99979 * 5 4 3 7 7 C 1.50696 * 109.47522 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00315 * 119.99966 * 7 6 5 9 9 C 1.37881 * 119.99929 * 299.99888 * 7 6 5 10 10 N 1.31513 * 119.99744 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00273 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46870 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.46973 * 120.00004 * 11 9 7 14 14 H 1.48496 * 109.47018 * 240.00352 * 11 9 7 15 15 C 1.53003 * 109.46897 * 300.00411 * 6 5 4 16 16 C 1.52996 * 109.47531 * 59.99791 * 15 6 5 17 17 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 18 18 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 19 19 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 20 20 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 21 21 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 22 22 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 23 23 H 1.09001 * 109.47273 * 300.00152 * 4 3 2 24 24 H 1.08998 * 109.47609 * 60.00099 * 4 3 2 25 25 H 1.09001 * 109.47165 * 300.00246 * 5 4 3 26 26 H 1.08998 * 109.47611 * 179.97438 * 5 4 3 27 27 H 1.09005 * 109.47496 * 59.99783 * 6 5 4 28 28 H 0.97002 * 120.00295 * 180.02562 * 10 9 7 29 29 H 1.09001 * 109.47096 * 299.99505 * 15 6 5 30 30 H 1.09009 * 109.46997 * 179.97438 * 15 6 5 31 31 H 1.08994 * 109.47129 * 179.97438 * 16 15 6 32 32 H 1.09001 * 109.47165 * 59.99756 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6352 2.1265 -1.3074 5 6 2.1446 3.5692 -1.3072 6 6 3.6695 3.5717 -1.1812 7 6 4.1712 4.9926 -1.1803 8 1 4.7236 5.3698 -0.3324 9 6 3.9252 5.8112 -2.2622 10 7 3.2530 5.3518 -3.2950 11 14 4.5477 7.5724 -2.2616 12 1 5.2701 7.8416 -0.9923 13 1 5.4697 7.7719 -3.4084 14 1 3.3977 8.5040 -2.3831 15 6 4.0742 2.8876 0.1262 16 6 3.5648 1.4449 0.1261 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 0.5139 0.8900 20 1 1.8934 -0.5137 0.8900 21 1 1.8934 -0.5138 -0.8899 22 1 1.6054 1.9816 0.8418 23 1 2.0699 1.5874 -2.1492 24 1 0.5490 2.1252 -1.3970 25 1 1.7097 4.1080 -0.4654 26 1 1.8567 4.0564 -2.2388 27 1 4.1046 3.0328 -2.0229 28 1 3.0802 5.9275 -4.0563 29 1 3.6392 3.4264 0.9680 30 1 5.1606 2.8889 0.2158 31 1 3.8535 0.9576 1.0572 32 1 3.9998 0.9061 -0.7157 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535837885.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:49 Heat of formation + Delta-G solvation = -45.747843 kcal Electronic energy + Delta-G solvation = -11425.440872 eV Core-core repulsion = 9577.071231 eV Total energy + Delta-G solvation = -1848.369641 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.99577 -33.97037 -31.83612 -29.56161 -28.47508 -24.86262 -22.42783 -21.37980 -19.71043 -18.65310 -16.25299 -14.72922 -14.31860 -14.08864 -13.19405 -13.01737 -12.58901 -12.48205 -12.15014 -11.52332 -11.11589 -11.08446 -10.83747 -10.63808 -10.47380 -10.14732 -10.04241 -9.86063 -9.62444 -9.23307 -8.72771 -8.51007 -8.21269 -5.90832 -3.96752 3.32972 3.40872 3.45083 4.49352 5.23849 5.32620 5.38669 5.46488 5.72872 5.94467 5.98046 6.11394 6.18595 6.32390 6.43171 6.44793 6.54145 6.60861 6.69936 6.81609 6.89320 6.95123 7.12939 7.27096 7.39142 7.64987 7.83897 8.12588 8.26209 8.56736 9.08057 9.67379 11.14506 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.076584 B = 0.010380 C = 0.009601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.522140 B = 2696.764416 C = 2915.798057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.085 4.085 4 C -0.112 4.112 5 C -0.110 4.110 6 C 0.048 3.952 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.059 3.941 10 N -0.891 5.891 11 Si 0.887 3.113 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.285 1.285 15 C -0.109 4.109 16 C -0.111 4.111 17 H 0.045 0.955 18 H 0.058 0.942 19 H 0.050 0.950 20 H 0.052 0.948 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.030 0.970 26 H 0.089 0.911 27 H 0.023 0.977 28 H 0.258 0.742 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.249 -7.279 4.715 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.103 4.103 4 C -0.149 4.149 5 C -0.148 4.148 6 C 0.030 3.970 7 C -0.549 4.549 8 H 0.071 0.929 9 C -0.141 4.141 10 N -0.530 5.530 11 Si 0.716 3.284 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.211 1.211 15 C -0.146 4.146 16 C -0.148 4.148 17 H 0.064 0.936 18 H 0.077 0.923 19 H 0.069 0.931 20 H 0.071 0.929 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.107 0.893 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.309 -7.219 4.543 9.149 hybrid contribution 0.295 1.000 -0.069 1.045 sum -3.015 -6.219 4.475 8.233 Atomic orbital electron populations 1.21810 0.96518 1.00592 1.01964 1.21599 0.95414 0.97635 1.01047 1.21179 0.95813 0.94315 0.99015 1.21691 0.98662 0.98870 0.95698 1.21599 0.98461 0.92273 1.02440 1.18651 0.92209 0.94622 0.91542 1.21318 1.34213 0.96934 1.02469 0.92855 1.24978 0.95288 0.98224 0.95632 1.69898 1.40618 1.35808 1.06704 0.86608 0.78591 0.85339 0.77885 1.19879 1.21122 1.21131 1.21621 0.98800 0.93586 1.00617 1.21589 0.95043 0.98450 0.99725 0.93627 0.92325 0.93124 0.92916 0.92445 0.92102 0.93198 0.93923 0.95074 0.89297 0.95888 0.93243 0.93639 0.93803 0.93962 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 37.16 0.36 -1.61 16 2 C -0.12 -1.72 5.40 -26.73 -0.14 -1.87 16 3 C -0.08 -1.48 2.19 -90.62 -0.20 -1.68 16 4 C -0.11 -2.21 4.96 -26.73 -0.13 -2.35 16 5 C -0.11 -2.65 4.98 -26.73 -0.13 -2.78 16 6 C 0.05 1.23 2.10 -91.77 -0.19 1.04 16 7 C -0.51 -14.42 8.56 -34.44 -0.29 -14.71 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 10 N -0.89 -25.93 11.32 55.43 0.63 -25.31 16 11 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 C -0.11 -2.35 5.14 -26.73 -0.14 -2.49 16 16 C -0.11 -2.02 5.21 -26.73 -0.14 -2.16 16 17 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 18 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16 19 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.04 0.78 6.57 -51.93 -0.34 0.44 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 27 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.04 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 248.64 15.07 3.75 3.75 Total: -1.00 -28.28 248.64 -7.37 -35.65 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -5.61 Total: -3.72 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -1.11 Total: -27.02 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.63 Total: -25.31 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.28 -7.37 -35.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535837885.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.098 kcal (2) G-P(sol) polarization free energy of solvation -28.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds