Wall clock time and date at job start Mon Mar 30 2020 01:54:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53006 * 109.47127 * 2 1
4 4 C 1.52999 * 109.46811 * 294.99812 * 3 2 1
5 5 C 1.52996 * 109.47179 * 179.97438 * 4 3 2
6 6 C 1.53002 * 109.47201 * 59.99979 * 5 4 3
7 7 C 1.50696 * 109.47522 * 180.02562 * 6 5 4
8 8 H 1.07998 * 120.00315 * 119.99966 * 7 6 5
9 9 C 1.37881 * 119.99929 * 299.99888 * 7 6 5
10 10 N 1.31513 * 119.99744 * 359.97438 * 9 7 6
11 11 Si 1.86800 * 120.00273 * 180.02562 * 9 7 6
12 12 H 1.48506 * 109.46870 * 359.97438 * 11 9 7
13 13 H 1.48493 * 109.46973 * 120.00004 * 11 9 7
14 14 H 1.48496 * 109.47018 * 240.00352 * 11 9 7
15 15 C 1.53003 * 109.46897 * 300.00411 * 6 5 4
16 16 C 1.52996 * 109.47531 * 59.99791 * 15 6 5
17 17 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
18 18 H 1.09001 * 109.46832 * 60.00321 * 1 2 3
19 19 H 1.09004 * 109.47261 * 300.00303 * 1 2 3
20 20 H 1.08998 * 109.47533 * 119.99499 * 2 1 3
21 21 H 1.08996 * 109.47853 * 239.99841 * 2 1 3
22 22 H 1.09001 * 109.47326 * 54.99931 * 3 2 1
23 23 H 1.09001 * 109.47273 * 300.00152 * 4 3 2
24 24 H 1.08998 * 109.47609 * 60.00099 * 4 3 2
25 25 H 1.09001 * 109.47165 * 300.00246 * 5 4 3
26 26 H 1.08998 * 109.47611 * 179.97438 * 5 4 3
27 27 H 1.09005 * 109.47496 * 59.99783 * 6 5 4
28 28 H 0.97002 * 120.00295 * 180.02562 * 10 9 7
29 29 H 1.09001 * 109.47096 * 299.99505 * 15 6 5
30 30 H 1.09009 * 109.46997 * 179.97438 * 15 6 5
31 31 H 1.08994 * 109.47129 * 179.97438 * 16 15 6
32 32 H 1.09001 * 109.47165 * 59.99756 * 16 15 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 1.6352 2.1265 -1.3074
5 6 2.1446 3.5692 -1.3072
6 6 3.6695 3.5717 -1.1812
7 6 4.1712 4.9926 -1.1803
8 1 4.7236 5.3698 -0.3324
9 6 3.9252 5.8112 -2.2622
10 7 3.2530 5.3518 -3.2950
11 14 4.5477 7.5724 -2.2616
12 1 5.2701 7.8416 -0.9923
13 1 5.4697 7.7719 -3.4084
14 1 3.3977 8.5040 -2.3831
15 6 4.0742 2.8876 0.1262
16 6 3.5648 1.4449 0.1261
17 1 -0.3633 -1.0277 0.0005
18 1 -0.3633 0.5138 -0.8900
19 1 -0.3634 0.5139 0.8900
20 1 1.8934 -0.5137 0.8900
21 1 1.8934 -0.5138 -0.8899
22 1 1.6054 1.9816 0.8418
23 1 2.0699 1.5874 -2.1492
24 1 0.5490 2.1252 -1.3970
25 1 1.7097 4.1080 -0.4654
26 1 1.8567 4.0564 -2.2388
27 1 4.1046 3.0328 -2.0229
28 1 3.0802 5.9275 -4.0563
29 1 3.6392 3.4264 0.9680
30 1 5.1606 2.8889 0.2158
31 1 3.8535 0.9576 1.0572
32 1 3.9998 0.9061 -0.7157
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001535837885.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:54:49
Heat of formation + Delta-G solvation = -45.747843 kcal
Electronic energy + Delta-G solvation = -11425.440872 eV
Core-core repulsion = 9577.071231 eV
Total energy + Delta-G solvation = -1848.369641 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 182.137 amu
Computer time = 0.13 seconds
Orbital eigenvalues (eV)
-37.99577 -33.97037 -31.83612 -29.56161 -28.47508 -24.86262 -22.42783 -21.37980
-19.71043 -18.65310 -16.25299 -14.72922 -14.31860 -14.08864 -13.19405 -13.01737
-12.58901 -12.48205 -12.15014 -11.52332 -11.11589 -11.08446 -10.83747 -10.63808
-10.47380 -10.14732 -10.04241 -9.86063 -9.62444 -9.23307 -8.72771 -8.51007
-8.21269 -5.90832 -3.96752 3.32972 3.40872 3.45083 4.49352 5.23849
5.32620 5.38669 5.46488 5.72872 5.94467 5.98046 6.11394 6.18595
6.32390 6.43171 6.44793 6.54145 6.60861 6.69936 6.81609 6.89320
6.95123 7.12939 7.27096 7.39142 7.64987 7.83897 8.12588 8.26209
8.56736 9.08057 9.67379 11.14506
Molecular weight = 182.14amu
Principal moments of inertia in cm(-1)
A = 0.076584 B = 0.010380 C = 0.009601
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 365.522140 B = 2696.764416 C = 2915.798057
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.119 4.119
3 C -0.085 4.085
4 C -0.112 4.112
5 C -0.110 4.110
6 C 0.048 3.952
7 C -0.511 4.511
8 H 0.053 0.947
9 C 0.059 3.941
10 N -0.891 5.891
11 Si 0.887 3.113
12 H -0.274 1.274
13 H -0.285 1.285
14 H -0.285 1.285
15 C -0.109 4.109
16 C -0.111 4.111
17 H 0.045 0.955
18 H 0.058 0.942
19 H 0.050 0.950
20 H 0.052 0.948
21 H 0.057 0.943
22 H 0.061 0.939
23 H 0.049 0.951
24 H 0.042 0.958
25 H 0.030 0.970
26 H 0.089 0.911
27 H 0.023 0.977
28 H 0.258 0.742
29 H 0.045 0.955
30 H 0.043 0.957
31 H 0.042 0.958
32 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.249 -7.279 4.715 9.261
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.157 4.157
3 C -0.103 4.103
4 C -0.149 4.149
5 C -0.148 4.148
6 C 0.030 3.970
7 C -0.549 4.549
8 H 0.071 0.929
9 C -0.141 4.141
10 N -0.530 5.530
11 Si 0.716 3.284
12 H -0.199 1.199
13 H -0.211 1.211
14 H -0.211 1.211
15 C -0.146 4.146
16 C -0.148 4.148
17 H 0.064 0.936
18 H 0.077 0.923
19 H 0.069 0.931
20 H 0.071 0.929
21 H 0.076 0.924
22 H 0.079 0.921
23 H 0.068 0.932
24 H 0.061 0.939
25 H 0.049 0.951
26 H 0.107 0.893
27 H 0.041 0.959
28 H 0.068 0.932
29 H 0.064 0.936
30 H 0.062 0.938
31 H 0.060 0.940
32 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -3.309 -7.219 4.543 9.149
hybrid contribution 0.295 1.000 -0.069 1.045
sum -3.015 -6.219 4.475 8.233
Atomic orbital electron populations
1.21810 0.96518 1.00592 1.01964 1.21599 0.95414 0.97635 1.01047
1.21179 0.95813 0.94315 0.99015 1.21691 0.98662 0.98870 0.95698
1.21599 0.98461 0.92273 1.02440 1.18651 0.92209 0.94622 0.91542
1.21318 1.34213 0.96934 1.02469 0.92855 1.24978 0.95288 0.98224
0.95632 1.69898 1.40618 1.35808 1.06704 0.86608 0.78591 0.85339
0.77885 1.19879 1.21122 1.21131 1.21621 0.98800 0.93586 1.00617
1.21589 0.95043 0.98450 0.99725 0.93627 0.92325 0.93124 0.92916
0.92445 0.92102 0.93198 0.93923 0.95074 0.89297 0.95888 0.93243
0.93639 0.93803 0.93962 0.92890
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.97 9.67 37.16 0.36 -1.61 16
2 C -0.12 -1.72 5.40 -26.73 -0.14 -1.87 16
3 C -0.08 -1.48 2.19 -90.62 -0.20 -1.68 16
4 C -0.11 -2.21 4.96 -26.73 -0.13 -2.35 16
5 C -0.11 -2.65 4.98 -26.73 -0.13 -2.78 16
6 C 0.05 1.23 2.10 -91.77 -0.19 1.04 16
7 C -0.51 -14.42 8.56 -34.44 -0.29 -14.71 16
8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16
9 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16
10 N -0.89 -25.93 11.32 55.43 0.63 -25.31 16
11 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16
12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
15 C -0.11 -2.35 5.14 -26.73 -0.14 -2.49 16
16 C -0.11 -2.02 5.21 -26.73 -0.14 -2.16 16
17 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16
18 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16
19 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
20 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
22 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16
23 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
24 H 0.04 0.78 6.57 -51.93 -0.34 0.44 16
25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16
26 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16
27 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16
28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
29 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16
30 H 0.04 0.93 8.14 -51.92 -0.42 0.51 16
31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16
LS Contribution 248.64 15.07 3.75 3.75
Total: -1.00 -28.28 248.64 -7.37 -35.65
By element:
Atomic # 1 Polarization: 1.89 SS G_CDS: -5.61 Total: -3.72 kcal
Atomic # 6 Polarization: -25.91 SS G_CDS: -1.11 Total: -27.02 kcal
Atomic # 7 Polarization: -25.93 SS G_CDS: 0.63 Total: -25.31 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal
Total LS contribution 3.75 Total: 3.75 kcal
Total: -28.28 -7.37 -35.65 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001535837885.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.098 kcal
(2) G-P(sol) polarization free energy of solvation -28.284 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.382 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.650 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.748 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.13 seconds