Wall clock time and date at job start Mon Mar 30 2020 01:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46811 * 294.99812 * 3 2 1 5 5 C 1.52996 * 109.47179 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47201 * 59.99979 * 5 4 3 7 7 C 1.50696 * 109.47522 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00315 * 119.99966 * 7 6 5 9 9 C 1.37881 * 119.99929 * 299.99888 * 7 6 5 10 10 N 1.31513 * 119.99744 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00273 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46870 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.46973 * 120.00004 * 11 9 7 14 14 H 1.48496 * 109.47018 * 240.00352 * 11 9 7 15 15 C 1.53003 * 109.46897 * 300.00411 * 6 5 4 16 16 C 1.52996 * 109.47531 * 59.99791 * 15 6 5 17 17 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 18 18 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 19 19 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 20 20 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 21 21 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 22 22 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 23 23 H 1.09001 * 109.47273 * 300.00152 * 4 3 2 24 24 H 1.08998 * 109.47609 * 60.00099 * 4 3 2 25 25 H 1.09001 * 109.47165 * 300.00246 * 5 4 3 26 26 H 1.08998 * 109.47611 * 179.97438 * 5 4 3 27 27 H 1.09005 * 109.47496 * 59.99783 * 6 5 4 28 28 H 0.97002 * 120.00295 * 180.02562 * 10 9 7 29 29 H 1.09001 * 109.47096 * 299.99505 * 15 6 5 30 30 H 1.09009 * 109.46997 * 179.97438 * 15 6 5 31 31 H 1.08994 * 109.47129 * 179.97438 * 16 15 6 32 32 H 1.09001 * 109.47165 * 59.99756 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6352 2.1265 -1.3074 5 6 2.1446 3.5692 -1.3072 6 6 3.6695 3.5717 -1.1812 7 6 4.1712 4.9926 -1.1803 8 1 4.7236 5.3698 -0.3324 9 6 3.9252 5.8112 -2.2622 10 7 3.2530 5.3518 -3.2950 11 14 4.5477 7.5724 -2.2616 12 1 5.2701 7.8416 -0.9923 13 1 5.4697 7.7719 -3.4084 14 1 3.3977 8.5040 -2.3831 15 6 4.0742 2.8876 0.1262 16 6 3.5648 1.4449 0.1261 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 0.5139 0.8900 20 1 1.8934 -0.5137 0.8900 21 1 1.8934 -0.5138 -0.8899 22 1 1.6054 1.9816 0.8418 23 1 2.0699 1.5874 -2.1492 24 1 0.5490 2.1252 -1.3970 25 1 1.7097 4.1080 -0.4654 26 1 1.8567 4.0564 -2.2388 27 1 4.1046 3.0328 -2.0229 28 1 3.0802 5.9275 -4.0563 29 1 3.6392 3.4264 0.9680 30 1 5.1606 2.8889 0.2158 31 1 3.8535 0.9576 1.0572 32 1 3.9998 0.9061 -0.7157 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535837885.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:49 Heat of formation + Delta-G solvation = -60.369830 kcal Electronic energy + Delta-G solvation = -11426.074929 eV Core-core repulsion = 9577.071231 eV Total energy + Delta-G solvation = -1849.003698 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.61416 -35.70112 -33.64053 -31.28289 -30.09801 -26.72345 -23.96563 -23.06720 -21.22226 -20.38122 -18.39488 -16.68012 -15.86249 -15.45589 -14.87374 -14.56701 -14.27420 -14.05969 -13.78120 -13.02631 -12.92408 -12.78776 -12.51177 -12.34525 -11.95742 -11.86128 -11.69264 -11.41603 -11.31486 -11.10873 -10.61412 -10.38381 -10.29522 -8.06850 -6.21501 1.38615 1.40019 1.51776 2.43185 3.18435 3.93550 4.03916 4.14272 4.45150 4.59701 4.65450 4.70567 4.84685 4.87432 4.93218 5.00833 5.10164 5.19106 5.23188 5.26426 5.30647 5.45939 5.51418 5.56818 5.58145 5.69532 5.78938 6.06516 6.23988 6.43491 6.92127 7.46346 8.96849 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.076584 B = 0.010380 C = 0.009601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.522140 B = 2696.764416 C = 2915.798057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.081 4.081 4 C -0.104 4.104 5 C -0.104 4.104 6 C 0.043 3.957 7 C -0.537 4.537 8 H 0.049 0.951 9 C 0.009 3.991 10 N -0.917 5.917 11 Si 0.953 3.047 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.280 1.280 15 C -0.104 4.104 16 C -0.106 4.106 17 H 0.065 0.935 18 H 0.048 0.952 19 H 0.054 0.946 20 H 0.072 0.928 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.040 0.960 24 H 0.058 0.942 25 H 0.023 0.977 26 H 0.053 0.947 27 H -0.011 1.011 28 H 0.259 0.741 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 -8.053 5.877 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.099 4.099 4 C -0.141 4.141 5 C -0.142 4.142 6 C 0.025 3.975 7 C -0.575 4.575 8 H 0.067 0.933 9 C -0.189 4.189 10 N -0.557 5.557 11 Si 0.779 3.221 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.205 1.205 15 C -0.141 4.141 16 C -0.143 4.143 17 H 0.084 0.916 18 H 0.067 0.933 19 H 0.073 0.927 20 H 0.091 0.909 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.007 0.993 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.595 -8.001 5.712 10.467 hybrid contribution 0.396 1.255 -0.451 1.391 sum -3.199 -6.746 5.261 9.133 Atomic orbital electron populations 1.21804 0.95396 1.01928 1.01707 1.21539 0.96372 0.95126 1.02064 1.21141 0.95252 0.96368 0.97172 1.21586 0.99429 0.95941 0.97185 1.21419 0.97645 0.94979 1.00138 1.18644 0.92897 0.93522 0.92441 1.21709 1.34599 0.98589 1.02581 0.93287 1.25777 0.95446 1.02374 0.95289 1.70041 1.41284 1.37222 1.07162 0.85583 0.78161 0.80293 0.78091 1.19227 1.20556 1.20538 1.21515 0.98803 0.95702 0.98125 1.21557 0.95577 0.95960 1.01223 0.91558 0.93317 0.92673 0.90927 0.92411 0.91967 0.94085 0.92350 0.95800 0.92807 0.99263 0.93152 0.93661 0.94022 0.90873 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.67 71.98 0.70 -2.74 16 2 C -0.11 -2.90 5.40 30.60 0.17 -2.73 16 3 C -0.08 -2.64 2.19 -10.79 -0.02 -2.67 16 4 C -0.10 -4.07 4.96 30.59 0.15 -3.92 16 5 C -0.10 -5.11 4.98 30.59 0.15 -4.96 16 6 C 0.04 2.27 2.10 -11.54 -0.02 2.24 16 7 C -0.54 -30.89 8.56 25.60 0.22 -30.68 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.01 0.53 5.30 84.66 0.45 0.98 16 10 N -0.92 -54.70 11.32 21.45 0.24 -54.46 16 11 Si 0.95 44.88 29.54 68.60 2.03 46.90 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 C -0.10 -4.45 5.14 30.59 0.16 -4.29 16 16 C -0.11 -3.65 5.21 30.59 0.16 -3.49 16 17 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 18 H 0.05 1.19 6.57 -2.39 -0.02 1.18 16 19 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 20 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 2.08 6.57 -2.39 -0.02 2.07 16 25 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 3.02 6.07 -2.39 -0.01 3.00 16 27 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 28 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -61.12 248.64 5.42 -55.70 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: 1.05 Total: 4.10 kcal Atomic # 6 Polarization: -54.35 SS G_CDS: 2.10 Total: -52.25 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.24 Total: -54.46 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -61.12 5.42 -55.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535837885.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.668 kcal (2) G-P(sol) polarization free energy of solvation -61.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds