Wall clock time and date at job start Mon Mar 30 2020 01:54:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53006 * 109.47127 * 2 1
4 4 C 1.52999 * 109.46811 * 294.99812 * 3 2 1
5 5 C 1.52996 * 109.47179 * 179.97438 * 4 3 2
6 6 C 1.53002 * 109.47201 * 59.99979 * 5 4 3
7 7 C 1.50696 * 109.47522 * 180.02562 * 6 5 4
8 8 H 1.07998 * 120.00315 * 119.99966 * 7 6 5
9 9 C 1.37881 * 119.99929 * 299.99888 * 7 6 5
10 10 N 1.31513 * 119.99744 * 359.97438 * 9 7 6
11 11 Si 1.86800 * 120.00273 * 180.02562 * 9 7 6
12 12 H 1.48506 * 109.46870 * 359.97438 * 11 9 7
13 13 H 1.48493 * 109.46973 * 120.00004 * 11 9 7
14 14 H 1.48496 * 109.47018 * 240.00352 * 11 9 7
15 15 C 1.53003 * 109.46897 * 300.00411 * 6 5 4
16 16 C 1.52996 * 109.47531 * 59.99791 * 15 6 5
17 17 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
18 18 H 1.09001 * 109.46832 * 60.00321 * 1 2 3
19 19 H 1.09004 * 109.47261 * 300.00303 * 1 2 3
20 20 H 1.08998 * 109.47533 * 119.99499 * 2 1 3
21 21 H 1.08996 * 109.47853 * 239.99841 * 2 1 3
22 22 H 1.09001 * 109.47326 * 54.99931 * 3 2 1
23 23 H 1.09001 * 109.47273 * 300.00152 * 4 3 2
24 24 H 1.08998 * 109.47609 * 60.00099 * 4 3 2
25 25 H 1.09001 * 109.47165 * 300.00246 * 5 4 3
26 26 H 1.08998 * 109.47611 * 179.97438 * 5 4 3
27 27 H 1.09005 * 109.47496 * 59.99783 * 6 5 4
28 28 H 0.97002 * 120.00295 * 180.02562 * 10 9 7
29 29 H 1.09001 * 109.47096 * 299.99505 * 15 6 5
30 30 H 1.09009 * 109.46997 * 179.97438 * 15 6 5
31 31 H 1.08994 * 109.47129 * 179.97438 * 16 15 6
32 32 H 1.09001 * 109.47165 * 59.99756 * 16 15 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 1.6352 2.1265 -1.3074
5 6 2.1446 3.5692 -1.3072
6 6 3.6695 3.5717 -1.1812
7 6 4.1712 4.9926 -1.1803
8 1 4.7236 5.3698 -0.3324
9 6 3.9252 5.8112 -2.2622
10 7 3.2530 5.3518 -3.2950
11 14 4.5477 7.5724 -2.2616
12 1 5.2701 7.8416 -0.9923
13 1 5.4697 7.7719 -3.4084
14 1 3.3977 8.5040 -2.3831
15 6 4.0742 2.8876 0.1262
16 6 3.5648 1.4449 0.1261
17 1 -0.3633 -1.0277 0.0005
18 1 -0.3633 0.5138 -0.8900
19 1 -0.3634 0.5139 0.8900
20 1 1.8934 -0.5137 0.8900
21 1 1.8934 -0.5138 -0.8899
22 1 1.6054 1.9816 0.8418
23 1 2.0699 1.5874 -2.1492
24 1 0.5490 2.1252 -1.3970
25 1 1.7097 4.1080 -0.4654
26 1 1.8567 4.0564 -2.2388
27 1 4.1046 3.0328 -2.0229
28 1 3.0802 5.9275 -4.0563
29 1 3.6392 3.4264 0.9680
30 1 5.1606 2.8889 0.2158
31 1 3.8535 0.9576 1.0572
32 1 3.9998 0.9061 -0.7157
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001535837885.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:54:49
Heat of formation + Delta-G solvation = -60.369830 kcal
Electronic energy + Delta-G solvation = -11426.074929 eV
Core-core repulsion = 9577.071231 eV
Total energy + Delta-G solvation = -1849.003698 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 182.137 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-39.61416 -35.70112 -33.64053 -31.28289 -30.09801 -26.72345 -23.96563 -23.06720
-21.22226 -20.38122 -18.39488 -16.68012 -15.86249 -15.45589 -14.87374 -14.56701
-14.27420 -14.05969 -13.78120 -13.02631 -12.92408 -12.78776 -12.51177 -12.34525
-11.95742 -11.86128 -11.69264 -11.41603 -11.31486 -11.10873 -10.61412 -10.38381
-10.29522 -8.06850 -6.21501 1.38615 1.40019 1.51776 2.43185 3.18435
3.93550 4.03916 4.14272 4.45150 4.59701 4.65450 4.70567 4.84685
4.87432 4.93218 5.00833 5.10164 5.19106 5.23188 5.26426 5.30647
5.45939 5.51418 5.56818 5.58145 5.69532 5.78938 6.06516 6.23988
6.43491 6.92127 7.46346 8.96849
Molecular weight = 182.14amu
Principal moments of inertia in cm(-1)
A = 0.076584 B = 0.010380 C = 0.009601
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 365.522140 B = 2696.764416 C = 2915.798057
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.114 4.114
3 C -0.081 4.081
4 C -0.104 4.104
5 C -0.104 4.104
6 C 0.043 3.957
7 C -0.537 4.537
8 H 0.049 0.951
9 C 0.009 3.991
10 N -0.917 5.917
11 Si 0.953 3.047
12 H -0.268 1.268
13 H -0.280 1.280
14 H -0.280 1.280
15 C -0.104 4.104
16 C -0.106 4.106
17 H 0.065 0.935
18 H 0.048 0.952
19 H 0.054 0.946
20 H 0.072 0.928
21 H 0.057 0.943
22 H 0.062 0.938
23 H 0.040 0.960
24 H 0.058 0.942
25 H 0.023 0.977
26 H 0.053 0.947
27 H -0.011 1.011
28 H 0.259 0.741
29 H 0.045 0.955
30 H 0.041 0.959
31 H 0.073 0.927
32 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.535 -8.053 5.877 10.577
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.151 4.151
3 C -0.099 4.099
4 C -0.141 4.141
5 C -0.142 4.142
6 C 0.025 3.975
7 C -0.575 4.575
8 H 0.067 0.933
9 C -0.189 4.189
10 N -0.557 5.557
11 Si 0.779 3.221
12 H -0.192 1.192
13 H -0.206 1.206
14 H -0.205 1.205
15 C -0.141 4.141
16 C -0.143 4.143
17 H 0.084 0.916
18 H 0.067 0.933
19 H 0.073 0.927
20 H 0.091 0.909
21 H 0.076 0.924
22 H 0.080 0.920
23 H 0.059 0.941
24 H 0.076 0.924
25 H 0.042 0.958
26 H 0.072 0.928
27 H 0.007 0.993
28 H 0.068 0.932
29 H 0.063 0.937
30 H 0.060 0.940
31 H 0.091 0.909
32 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -3.595 -8.001 5.712 10.467
hybrid contribution 0.396 1.255 -0.451 1.391
sum -3.199 -6.746 5.261 9.133
Atomic orbital electron populations
1.21804 0.95396 1.01928 1.01707 1.21539 0.96372 0.95126 1.02064
1.21141 0.95252 0.96368 0.97172 1.21586 0.99429 0.95941 0.97185
1.21419 0.97645 0.94979 1.00138 1.18644 0.92897 0.93522 0.92441
1.21709 1.34599 0.98589 1.02581 0.93287 1.25777 0.95446 1.02374
0.95289 1.70041 1.41284 1.37222 1.07162 0.85583 0.78161 0.80293
0.78091 1.19227 1.20556 1.20538 1.21515 0.98803 0.95702 0.98125
1.21557 0.95577 0.95960 1.01223 0.91558 0.93317 0.92673 0.90927
0.92411 0.91967 0.94085 0.92350 0.95800 0.92807 0.99263 0.93152
0.93661 0.94022 0.90873 0.93169
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.44 9.67 71.98 0.70 -2.74 16
2 C -0.11 -2.90 5.40 30.60 0.17 -2.73 16
3 C -0.08 -2.64 2.19 -10.79 -0.02 -2.67 16
4 C -0.10 -4.07 4.96 30.59 0.15 -3.92 16
5 C -0.10 -5.11 4.98 30.59 0.15 -4.96 16
6 C 0.04 2.27 2.10 -11.54 -0.02 2.24 16
7 C -0.54 -30.89 8.56 25.60 0.22 -30.68 16
8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16
9 C 0.01 0.53 5.30 84.66 0.45 0.98 16
10 N -0.92 -54.70 11.32 21.45 0.24 -54.46 16
11 Si 0.95 44.88 29.54 68.60 2.03 46.90 16
12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16
13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16
14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16
15 C -0.10 -4.45 5.14 30.59 0.16 -4.29 16
16 C -0.11 -3.65 5.21 30.59 0.16 -3.49 16
17 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16
18 H 0.05 1.19 6.57 -2.39 -0.02 1.18 16
19 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16
20 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16
21 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16
22 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16
23 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16
24 H 0.06 2.08 6.57 -2.39 -0.02 2.07 16
25 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16
26 H 0.05 3.02 6.07 -2.39 -0.01 3.00 16
27 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16
28 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16
29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16
30 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16
31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16
Total: -1.00 -61.12 248.64 5.42 -55.70
By element:
Atomic # 1 Polarization: 3.06 SS G_CDS: 1.05 Total: 4.10 kcal
Atomic # 6 Polarization: -54.35 SS G_CDS: 2.10 Total: -52.25 kcal
Atomic # 7 Polarization: -54.70 SS G_CDS: 0.24 Total: -54.46 kcal
Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal
Total: -61.12 5.42 -55.70 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001535837885.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.668 kcal
(2) G-P(sol) polarization free energy of solvation -61.122 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.790 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.702 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.370 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds