Wall clock time and date at job start Mon Mar 30 2020 01:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.36945 * 119.99840 * 300.00381 * 3 2 1 5 5 H 1.08000 * 120.00308 * 359.97438 * 4 3 2 6 6 C 1.38815 * 119.99673 * 179.97438 * 4 3 2 7 7 N 1.31618 * 119.99537 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00101 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47192 * 89.99745 * 8 6 4 10 10 H 1.48503 * 109.46814 * 209.99847 * 8 6 4 11 11 H 1.48495 * 109.46995 * 329.99887 * 8 6 4 12 12 C 1.52997 * 109.47127 * 240.00214 * 2 1 3 13 13 C 1.52996 * 109.47131 * 180.02562 * 12 2 1 14 14 C 1.53000 * 109.47518 * 59.99828 * 13 12 2 15 15 C 1.53005 * 109.46632 * 300.00318 * 14 13 12 16 16 C 1.52996 * 109.47245 * 59.99973 * 15 14 13 17 17 H 1.09001 * 109.46801 * 60.00058 * 1 2 3 18 18 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47050 * 299.99945 * 1 2 3 20 20 H 0.96998 * 119.99994 * 119.99831 * 3 2 1 21 21 H 0.97001 * 119.99505 * 180.02562 * 7 6 4 22 22 H 1.09001 * 109.47289 * 299.99953 * 12 2 1 23 23 H 1.09004 * 109.47261 * 59.99697 * 12 2 1 24 24 H 1.09001 * 109.46997 * 299.99574 * 13 12 2 25 25 H 1.08996 * 109.47134 * 180.02562 * 13 12 2 26 26 H 1.08992 * 109.47132 * 180.02562 * 14 13 12 27 27 H 1.08992 * 109.46645 * 59.99985 * 14 13 12 28 28 H 1.09001 * 109.46962 * 299.99689 * 15 14 13 29 29 H 1.08996 * 109.46524 * 179.97438 * 15 14 13 30 30 H 1.09000 * 109.46870 * 179.97438 * 16 15 14 31 31 H 1.09001 * 109.47372 * 59.99967 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.6874 2.2244 -1.0271 5 1 1.0668 1.8711 -1.8373 6 6 2.1497 3.5334 -1.0268 7 7 1.8320 4.3436 -2.0141 8 14 3.2225 4.1447 0.3749 9 1 4.6506 3.9029 0.0471 10 1 2.9991 5.5997 0.5709 11 1 2.8707 3.4176 1.6210 12 6 2.0401 -0.7212 -1.2492 13 6 3.5700 -0.7217 -1.2489 14 6 4.0796 -1.4434 0.0003 15 6 3.5695 -0.7221 1.2495 16 6 2.0395 -0.7216 1.2492 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 2.5760 1.6985 0.7275 21 1 2.1554 5.2581 -2.0141 22 1 1.6767 -1.7489 -1.2493 23 1 1.6767 -0.2074 -2.1393 24 1 3.9337 0.3058 -1.2487 25 1 3.9333 -1.2351 -2.1391 26 1 5.1695 -1.4433 0.0007 27 1 3.7159 -2.4708 0.0000 28 1 3.9332 0.3055 1.2497 29 1 3.9322 -1.2364 2.1394 30 1 1.6762 -0.2082 2.1394 31 1 1.6758 -1.7492 1.2490 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045045735.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:39 Heat of formation + Delta-G solvation = -10.576613 kcal Electronic energy + Delta-G solvation = -11929.355593 eV Core-core repulsion = 10017.085180 eV Total energy + Delta-G solvation = -1912.270413 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.66561 -33.76786 -31.71531 -30.22198 -29.34112 -25.78494 -23.31135 -22.04854 -20.44290 -18.07098 -17.64344 -14.96489 -14.41847 -14.27751 -13.59873 -13.46617 -12.63258 -12.50106 -12.10814 -11.83373 -11.55903 -11.23824 -10.90309 -10.82795 -10.67688 -10.43591 -10.22325 -9.89968 -9.66593 -9.54669 -9.17244 -8.79158 -7.15684 -5.69360 -3.02649 3.41039 3.44212 3.49024 4.65412 5.18596 5.27934 5.31478 5.49819 5.63012 5.80478 5.89905 6.00396 6.04817 6.13403 6.16937 6.25333 6.40793 6.45036 6.55277 6.61821 6.72442 6.74058 6.90752 7.10054 7.15565 7.21494 8.09155 8.51073 9.30355 10.03452 10.24736 11.49554 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.041646 B = 0.016278 C = 0.014903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.173511 B = 1719.673881 C = 1878.362685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.202 3.798 3 N -0.741 5.741 4 C -0.228 4.228 5 H 0.091 0.909 6 C 0.001 3.999 7 N -0.938 5.938 8 Si 0.879 3.121 9 H -0.286 1.286 10 H -0.293 1.293 11 H -0.278 1.278 12 C -0.117 4.117 13 C -0.112 4.112 14 C -0.113 4.113 15 C -0.117 4.117 16 C -0.117 4.117 17 H 0.059 0.941 18 H 0.036 0.964 19 H 0.047 0.953 20 H 0.360 0.640 21 H 0.257 0.743 22 H 0.042 0.958 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 -10.898 5.500 12.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.112 3.888 3 N -0.385 5.385 4 C -0.358 4.358 5 H 0.109 0.891 6 C -0.194 4.194 7 N -0.587 5.587 8 Si 0.710 3.290 9 H -0.213 1.213 10 H -0.220 1.220 11 H -0.204 1.204 12 C -0.157 4.157 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.155 4.155 16 C -0.155 4.155 17 H 0.078 0.922 18 H 0.056 0.944 19 H 0.066 0.934 20 H 0.193 0.807 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.077 -10.791 5.301 12.201 hybrid contribution 0.756 0.656 0.923 1.362 sum 2.833 -10.135 6.223 12.226 Atomic orbital electron populations 1.22207 0.97530 0.99068 1.02197 1.19538 0.91882 0.85072 0.92326 1.42858 1.61475 1.07829 1.26316 1.19013 1.25711 0.91299 0.99806 0.89146 1.24625 1.00814 0.96386 0.97587 1.69695 1.50228 1.06359 1.32407 0.86627 0.81185 0.78052 0.83170 1.21264 1.21967 1.20440 1.21879 0.95390 0.98256 1.00126 1.21401 0.96433 1.01487 0.95652 1.21490 0.99224 0.98673 0.95710 1.21489 0.96065 1.00890 0.97020 1.21738 0.95431 0.99941 0.98362 0.92216 0.94448 0.93425 0.80662 0.93272 0.93882 0.91668 0.90498 0.93651 0.93065 0.92958 0.91819 0.93142 0.92427 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.44 37.16 0.31 -2.49 16 2 C 0.20 3.89 0.74 -131.82 -0.10 3.80 16 3 N -0.74 -17.28 3.88 -47.23 -0.18 -17.46 16 4 C -0.23 -6.30 9.15 -15.05 -0.14 -6.44 16 5 H 0.09 2.69 6.92 -52.49 -0.36 2.32 16 6 C 0.00 0.02 5.50 -17.43 -0.10 -0.07 16 7 N -0.94 -29.58 13.97 55.49 0.78 -28.80 16 8 Si 0.88 22.33 27.73 -169.99 -4.71 17.62 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 11 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 12 C -0.12 -2.15 4.56 -26.73 -0.12 -2.28 16 13 C -0.11 -1.97 5.77 -26.73 -0.15 -2.13 16 14 C -0.11 -1.70 5.92 -26.73 -0.16 -1.86 16 15 C -0.12 -1.82 5.75 -26.73 -0.15 -1.98 16 16 C -0.12 -1.89 4.78 -26.73 -0.13 -2.02 16 17 H 0.06 1.23 7.27 -51.93 -0.38 0.85 16 18 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 19 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 20 H 0.36 8.40 4.38 -40.82 -0.18 8.22 16 21 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 1.35 7.27 -51.93 -0.38 0.97 16 24 H 0.08 1.59 7.60 -51.93 -0.39 1.20 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.11 6.86 -51.93 -0.36 0.76 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 238.82 15.07 3.60 3.60 Total: -1.00 -29.86 238.82 -6.28 -36.14 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.02 Total: 4.38 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -0.73 Total: -15.47 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.59 Total: -46.26 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.86 -6.28 -36.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045045735.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.561 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds