Wall clock time and date at job start Mon Mar 30 2020 01:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 115.54880 * 2 1 4 4 C 1.53000 * 117.49792 * 145.66761 * 2 1 3 5 5 C 1.53002 * 60.02940 * 107.48056 * 4 2 1 6 6 H 1.08999 * 117.49664 * 252.51862 * 5 4 2 7 7 N 1.46898 * 117.49965 * 107.50426 * 5 4 2 8 8 C 1.46905 * 111.00154 * 136.38976 * 7 5 4 9 9 C 1.52997 * 109.46832 * 180.02562 * 8 7 5 10 10 C 1.50698 * 109.46852 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00200 * 0.02562 * 10 9 8 12 12 C 1.37888 * 119.99949 * 179.97438 * 10 9 8 13 13 N 1.31509 * 119.99823 * 180.02562 * 12 10 9 14 14 Si 1.86792 * 119.99823 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47226 * 90.00004 * 14 12 10 16 16 H 1.48506 * 109.46901 * 209.99980 * 14 12 10 17 17 H 1.48501 * 109.47261 * 329.99722 * 14 12 10 18 18 H 1.08998 * 109.47616 * 325.72414 * 1 2 3 19 19 H 1.08996 * 109.47220 * 85.72699 * 1 2 3 20 20 H 1.09006 * 109.46853 * 205.72235 * 1 2 3 21 21 H 1.09001 * 109.47296 * 154.27477 * 3 2 1 22 22 H 1.09007 * 109.46973 * 274.27963 * 3 2 1 23 23 H 1.09008 * 109.47059 * 34.27345 * 3 2 1 24 24 H 1.09002 * 117.49833 * 214.98161 * 4 2 1 25 25 H 1.09002 * 117.49953 * 359.97438 * 4 2 1 26 26 H 1.00896 * 110.99885 * 12.43230 * 7 5 4 27 27 H 1.08998 * 109.46843 * 299.99703 * 8 7 5 28 28 H 1.08998 * 109.46995 * 59.99768 * 8 7 5 29 29 H 1.08998 * 109.47144 * 299.99495 * 9 8 7 30 30 H 1.08998 * 109.47540 * 60.00077 * 9 8 7 31 31 H 0.96994 * 120.00329 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2365 -1.1207 0.7654 5 6 2.2367 -1.1221 -0.7646 6 1 1.6114 -1.8598 -1.2673 7 7 3.4971 -0.7918 -1.4430 8 6 3.7457 -1.7056 -2.5660 9 6 5.0644 -1.3313 -3.2457 10 6 5.3197 -2.2691 -4.3973 11 1 4.6121 -3.0533 -4.6223 12 6 6.4564 -2.1253 -5.1646 13 7 6.6789 -2.9433 -6.1699 14 14 7.6800 -0.7685 -4.7759 15 1 8.6927 -1.2755 -3.8153 16 1 8.3556 -0.3381 -6.0264 17 1 6.9645 0.3868 -4.1770 18 1 -0.3634 0.8492 0.5787 19 1 -0.3633 0.0766 -1.0248 20 1 -0.3633 -0.9259 0.4460 21 1 3.1819 1.3089 0.4461 22 1 2.2774 1.7412 -1.0249 23 1 1.5803 2.0744 0.5788 24 1 3.1715 -0.8747 1.2687 25 1 1.6112 -1.8578 1.2694 26 1 4.2695 -0.7981 -0.7939 27 1 3.8061 -2.7288 -2.1953 28 1 2.9306 -1.6272 -3.2854 29 1 5.0045 -0.3081 -3.6163 30 1 5.8792 -1.4100 -2.5260 31 1 7.4786 -2.8425 -6.7094 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045134197.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:10 Heat of formation + Delta-G solvation = 6.194410 kcal Electronic energy + Delta-G solvation = -10893.925181 eV Core-core repulsion = 8982.382014 eV Total energy + Delta-G solvation = -1911.543167 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.56723 -34.69728 -32.46804 -29.83322 -28.05657 -27.33159 -23.92385 -21.41979 -20.38414 -18.63694 -16.78293 -15.19972 -15.06572 -14.25856 -14.00746 -13.63503 -13.03030 -12.77659 -12.50615 -12.23226 -11.97123 -11.71566 -11.52446 -11.09705 -10.98333 -10.47272 -10.03575 -9.99299 -9.76486 -9.31985 -9.21993 -8.52916 -7.72760 -6.03710 -4.02078 3.32728 3.40201 3.46372 3.88714 4.45429 4.47113 4.93355 4.97142 5.18398 5.30438 5.32672 5.66062 5.73338 5.82314 5.94453 5.98406 6.07827 6.13325 6.20609 6.27528 6.32367 6.53508 6.77217 7.16300 7.38481 7.63679 7.75617 7.90870 8.53891 9.00365 9.58616 11.09671 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.070540 B = 0.007839 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.839915 B = 3570.861401 C = 3767.708735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.127 4.127 3 C -0.100 4.100 4 C -0.204 4.204 5 C 0.038 3.962 6 H 0.105 0.895 7 N -0.660 5.660 8 C 0.075 3.925 9 C -0.010 4.010 10 C -0.521 4.521 11 H 0.071 0.929 12 C 0.067 3.933 13 N -0.904 5.904 14 Si 0.881 3.119 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.263 1.263 18 H 0.056 0.944 19 H 0.059 0.941 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.065 0.935 23 H 0.046 0.954 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.336 0.664 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.025 0.975 30 H 0.009 0.991 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.616 5.913 12.659 16.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.129 4.129 3 C -0.158 4.158 4 C -0.243 4.243 5 C -0.073 4.073 6 H 0.122 0.878 7 N -0.289 5.289 8 C -0.053 4.053 9 C -0.048 4.048 10 C -0.560 4.560 11 H 0.089 0.911 12 C -0.134 4.134 13 N -0.543 5.543 14 Si 0.709 3.291 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.188 1.188 18 H 0.075 0.925 19 H 0.078 0.922 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.065 0.935 24 H 0.110 0.890 25 H 0.107 0.893 26 H 0.155 0.845 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.027 0.973 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.749 6.352 12.084 16.215 hybrid contribution 0.998 -0.269 0.596 1.193 sum -7.750 6.083 12.680 16.058 Atomic orbital electron populations 1.21322 0.92525 1.01359 1.01743 1.21785 0.94154 0.92252 1.04695 1.21124 0.99150 0.93368 1.02121 1.23716 1.02692 1.02052 0.95864 1.22600 0.95179 0.98967 0.90597 0.87767 1.60285 1.02650 1.53955 1.12043 1.22008 1.00143 0.92171 0.90984 1.19552 0.91778 0.97807 0.95674 1.21069 1.07439 1.15314 1.12164 0.91099 1.25009 0.97839 0.95911 0.94675 1.69911 1.27472 1.37897 1.19021 0.86745 0.81420 0.83208 0.77754 1.20400 1.21401 1.18759 0.92464 0.92232 0.92867 0.92842 0.91618 0.93466 0.89034 0.89302 0.84490 0.95825 0.91606 0.95633 0.97310 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.85 37.16 0.37 -0.84 16 2 C -0.13 -1.62 2.70 -154.47 -0.42 -2.04 16 3 C -0.10 -1.26 9.31 37.15 0.35 -0.92 16 4 C -0.20 -2.54 9.52 -26.73 -0.25 -2.79 16 5 C 0.04 0.56 6.01 -67.68 -0.41 0.16 16 6 H 0.10 1.55 7.90 -51.93 -0.41 1.14 16 7 N -0.66 -11.47 6.16 -106.69 -0.66 -12.13 16 8 C 0.07 1.54 5.48 -3.82 -0.02 1.52 16 9 C -0.01 -0.25 4.30 -27.89 -0.12 -0.37 16 10 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 11 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 14 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 17 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 18 H 0.06 0.55 7.92 -51.93 -0.41 0.13 16 19 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.05 0.52 7.90 -51.93 -0.41 0.11 16 21 H 0.05 0.67 7.90 -51.93 -0.41 0.26 16 22 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 23 H 0.05 0.51 7.92 -51.92 -0.41 0.10 16 24 H 0.09 1.11 7.99 -51.93 -0.42 0.69 16 25 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 26 H 0.34 5.55 8.52 -39.29 -0.33 5.21 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 30 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 258.37 15.07 3.89 3.89 Total: -1.00 -30.29 258.37 -6.86 -37.15 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.26 Total: -0.02 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -0.94 Total: -18.87 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.12 Total: -39.58 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.29 -6.86 -37.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045134197.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.341 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds