Wall clock time and date at job start Mon Mar 30 2020 01:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 115.54880 * 2 1 4 4 C 1.53000 * 117.49792 * 145.66761 * 2 1 3 5 5 C 1.53002 * 60.02940 * 107.48056 * 4 2 1 6 6 H 1.08999 * 117.49664 * 252.51862 * 5 4 2 7 7 N 1.46898 * 117.49965 * 107.50426 * 5 4 2 8 8 C 1.46905 * 111.00154 * 136.38976 * 7 5 4 9 9 C 1.52997 * 109.46832 * 180.02562 * 8 7 5 10 10 C 1.50698 * 109.46852 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00200 * 0.02562 * 10 9 8 12 12 C 1.37888 * 119.99949 * 179.97438 * 10 9 8 13 13 N 1.31509 * 119.99823 * 180.02562 * 12 10 9 14 14 Si 1.86792 * 119.99823 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47226 * 90.00004 * 14 12 10 16 16 H 1.48506 * 109.46901 * 209.99980 * 14 12 10 17 17 H 1.48501 * 109.47261 * 329.99722 * 14 12 10 18 18 H 1.08998 * 109.47616 * 325.72414 * 1 2 3 19 19 H 1.08996 * 109.47220 * 85.72699 * 1 2 3 20 20 H 1.09006 * 109.46853 * 205.72235 * 1 2 3 21 21 H 1.09001 * 109.47296 * 154.27477 * 3 2 1 22 22 H 1.09007 * 109.46973 * 274.27963 * 3 2 1 23 23 H 1.09008 * 109.47059 * 34.27345 * 3 2 1 24 24 H 1.09002 * 117.49833 * 214.98161 * 4 2 1 25 25 H 1.09002 * 117.49953 * 359.97438 * 4 2 1 26 26 H 1.00896 * 110.99885 * 12.43230 * 7 5 4 27 27 H 1.08998 * 109.46843 * 299.99703 * 8 7 5 28 28 H 1.08998 * 109.46995 * 59.99768 * 8 7 5 29 29 H 1.08998 * 109.47144 * 299.99495 * 9 8 7 30 30 H 1.08998 * 109.47540 * 60.00077 * 9 8 7 31 31 H 0.96994 * 120.00329 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2365 -1.1207 0.7654 5 6 2.2367 -1.1221 -0.7646 6 1 1.6114 -1.8598 -1.2673 7 7 3.4971 -0.7918 -1.4430 8 6 3.7457 -1.7056 -2.5660 9 6 5.0644 -1.3313 -3.2457 10 6 5.3197 -2.2691 -4.3973 11 1 4.6121 -3.0533 -4.6223 12 6 6.4564 -2.1253 -5.1646 13 7 6.6789 -2.9433 -6.1699 14 14 7.6800 -0.7685 -4.7759 15 1 8.6927 -1.2755 -3.8153 16 1 8.3556 -0.3381 -6.0264 17 1 6.9645 0.3868 -4.1770 18 1 -0.3634 0.8492 0.5787 19 1 -0.3633 0.0766 -1.0248 20 1 -0.3633 -0.9259 0.4460 21 1 3.1819 1.3089 0.4461 22 1 2.2774 1.7412 -1.0249 23 1 1.5803 2.0744 0.5788 24 1 3.1715 -0.8747 1.2687 25 1 1.6112 -1.8578 1.2694 26 1 4.2695 -0.7981 -0.7939 27 1 3.8061 -2.7288 -2.1953 28 1 2.9306 -1.6272 -3.2854 29 1 5.0045 -0.3081 -3.6163 30 1 5.8792 -1.4100 -2.5260 31 1 7.4786 -2.8425 -6.7094 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045134197.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:10 Heat of formation + Delta-G solvation = -13.682467 kcal Electronic energy + Delta-G solvation = -10894.787107 eV Core-core repulsion = 8982.382014 eV Total energy + Delta-G solvation = -1912.405093 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.67737 -36.37338 -34.50164 -31.51087 -29.30930 -28.27288 -25.81955 -22.58686 -22.23814 -19.70585 -18.96150 -16.60714 -16.41670 -16.14274 -15.44651 -14.80837 -14.54157 -14.34856 -13.97010 -13.45964 -13.29001 -12.97137 -12.89619 -12.61999 -12.13772 -11.98923 -11.83743 -11.78916 -11.48322 -11.25139 -10.78087 -10.48730 -9.05311 -8.31358 -6.36304 1.35778 1.38591 1.51742 2.35975 2.81951 3.04108 3.21566 3.91234 3.97330 4.10733 4.30917 4.45744 4.53029 4.65713 4.86380 4.90084 4.91604 4.95755 5.11469 5.13991 5.17715 5.30113 5.36603 5.46723 5.56702 5.62490 6.17057 6.24154 6.50032 6.72231 7.28659 8.85426 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.070540 B = 0.007839 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.839915 B = 3570.861401 C = 3767.708735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.122 4.122 3 C -0.101 4.101 4 C -0.186 4.186 5 C 0.007 3.993 6 H 0.099 0.901 7 N -0.659 5.659 8 C 0.090 3.910 9 C -0.004 4.004 10 C -0.536 4.536 11 H 0.031 0.969 12 C 0.005 3.995 13 N -0.951 5.951 14 Si 0.955 3.045 15 H -0.265 1.265 16 H -0.283 1.283 17 H -0.248 1.248 18 H 0.073 0.927 19 H 0.053 0.947 20 H 0.062 0.938 21 H 0.051 0.949 22 H 0.048 0.952 23 H 0.067 0.933 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.342 0.658 27 H 0.018 0.982 28 H 0.054 0.946 29 H 0.022 0.978 30 H 0.019 0.981 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.638 7.473 14.672 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.123 4.123 3 C -0.158 4.158 4 C -0.224 4.224 5 C -0.104 4.104 6 H 0.116 0.884 7 N -0.289 5.289 8 C -0.039 4.039 9 C -0.041 4.041 10 C -0.575 4.575 11 H 0.050 0.950 12 C -0.192 4.192 13 N -0.591 5.591 14 Si 0.778 3.222 15 H -0.190 1.190 16 H -0.208 1.208 17 H -0.172 1.172 18 H 0.091 0.909 19 H 0.072 0.928 20 H 0.081 0.919 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.115 0.885 25 H 0.123 0.877 26 H 0.161 0.839 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.794 7.914 14.122 18.423 hybrid contribution 0.922 -0.819 -0.034 1.234 sum -7.872 7.095 14.088 17.628 Atomic orbital electron populations 1.21352 0.90984 1.02668 1.01886 1.21937 0.95338 0.91939 1.03092 1.21133 0.99580 0.93682 1.01384 1.23762 1.03075 1.01858 0.93742 1.22658 0.94380 1.01047 0.92276 0.88356 1.60201 1.04004 1.52861 1.11831 1.21644 0.97793 0.92525 0.91918 1.19428 0.94055 0.96220 0.94443 1.21407 1.06834 1.15297 1.13922 0.95043 1.26017 1.00140 0.98698 0.94316 1.70060 1.28542 1.40109 1.20401 0.85585 0.78660 0.79950 0.77998 1.18975 1.20847 1.17182 0.90852 0.92756 0.91859 0.92987 0.93326 0.91431 0.88473 0.87653 0.83916 0.96393 0.92774 0.95916 0.96256 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.85 71.98 0.71 -1.40 16 2 C -0.12 -2.81 2.70 -52.16 -0.14 -2.95 16 3 C -0.10 -2.29 9.31 71.98 0.67 -1.62 16 4 C -0.19 -4.09 9.52 30.60 0.29 -3.80 16 5 C 0.01 0.20 6.01 44.94 0.27 0.47 16 6 H 0.10 2.86 7.90 -2.39 -0.02 2.84 16 7 N -0.66 -22.16 6.16 -491.45 -3.03 -25.18 16 8 C 0.09 3.72 5.48 86.30 0.47 4.19 16 9 C 0.00 -0.18 4.30 29.85 0.13 -0.05 16 10 C -0.54 -31.78 9.66 25.60 0.25 -31.53 16 11 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 12 C 0.01 0.31 5.47 84.66 0.46 0.77 16 13 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 14 Si 0.96 45.13 27.47 68.60 1.88 47.02 16 15 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 18 H 0.07 1.16 7.92 -2.39 -0.02 1.14 16 19 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 20 H 0.06 1.06 7.90 -2.38 -0.02 1.04 16 21 H 0.05 1.18 7.90 -2.39 -0.02 1.16 16 22 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 23 H 0.07 1.25 7.92 -2.38 -0.02 1.23 16 24 H 0.10 2.06 7.99 -2.39 -0.02 2.04 16 25 H 0.11 2.00 8.05 -2.39 -0.02 1.98 16 26 H 0.34 10.68 8.52 -89.70 -0.76 9.91 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 30 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 31 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -65.09 258.37 2.53 -62.55 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.26 Total: 11.77 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 3.11 Total: -35.91 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -2.73 Total: -85.43 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.02 kcal Total: -65.09 2.53 -62.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045134197.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.872 kcal (2) G-P(sol) polarization free energy of solvation -65.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds