Wall clock time and date at job start Mon Mar 30 2020 02:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.05876 * 2 1 4 4 C 1.54265 * 110.03114 * 238.57856 * 2 1 3 5 5 C 1.54892 * 104.19470 * 217.10632 * 4 2 1 6 6 C 1.54886 * 102.74899 * 37.94504 * 5 4 2 7 7 H 1.09002 * 110.48874 * 203.24438 * 6 5 4 8 8 N 1.46506 * 110.48725 * 80.73402 * 6 5 4 9 9 C 1.36941 * 119.99572 * 150.77875 * 8 6 5 10 10 H 1.07993 * 120.00306 * 359.72419 * 9 8 6 11 11 C 1.38813 * 119.99469 * 179.72354 * 9 8 6 12 12 N 1.31614 * 120.00343 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99749 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46900 * 90.00288 * 13 11 9 15 15 H 1.48501 * 109.47108 * 209.99980 * 13 11 9 16 16 H 1.48501 * 109.47267 * 330.00234 * 13 11 9 17 17 C 1.53877 * 110.02914 * 121.41413 * 2 1 3 18 18 H 1.09002 * 110.02986 * 238.56486 * 17 2 1 19 19 C 1.53001 * 110.03457 * 359.97438 * 17 2 1 20 20 H 1.09004 * 109.47249 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46782 * 299.96667 * 1 2 3 22 22 H 1.08998 * 109.47041 * 59.96429 * 1 2 3 23 23 H 1.08997 * 110.48469 * 98.43021 * 4 2 1 24 24 H 1.09003 * 110.48425 * 335.78303 * 4 2 1 25 25 H 1.08995 * 110.75806 * 279.62903 * 5 4 2 26 26 H 1.09003 * 110.75399 * 156.25793 * 5 4 2 27 27 H 0.96992 * 120.00105 * 330.50196 * 8 6 5 28 28 H 0.96996 * 120.00143 * 179.97438 * 12 11 9 29 29 H 1.09002 * 109.46775 * 179.24694 * 19 17 2 30 30 H 1.09001 * 109.47095 * 299.24441 * 19 17 2 31 31 H 1.08995 * 109.46878 * 59.24778 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0584 -0.7556 -1.2368 5 6 3.3137 -1.5008 -0.7190 6 6 2.8874 -1.9407 0.7036 7 1 3.7637 -2.1060 1.3305 8 7 2.0671 -3.1529 0.6413 9 6 2.0734 -4.0383 1.6860 10 1 2.6864 -3.8452 2.5538 11 6 1.2917 -5.1840 1.6294 12 7 0.5449 -5.4196 0.5716 13 14 1.3008 -6.3922 3.0541 14 1 0.2429 -6.0183 4.0268 15 1 1.0415 -7.7621 2.5430 16 1 2.6251 -6.3564 3.7250 17 6 2.0571 -0.7535 1.2338 18 1 2.6867 -0.0953 1.8325 19 6 0.8861 -1.2663 2.0746 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5133 0.8903 22 1 -0.3633 0.5144 -0.8897 23 1 2.3297 -0.0538 -2.0254 24 1 1.3142 -1.4661 -1.5965 25 1 4.1710 -0.8292 -0.6750 26 1 3.5325 -2.3680 -1.3421 27 1 1.5164 -3.3263 -0.1381 28 1 -0.0010 -6.2204 0.5319 29 1 1.2695 -1.8096 2.9382 30 1 0.2853 -0.4224 2.4136 31 1 0.2695 -1.9321 1.4708 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083044614.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:02 Heat of formation + Delta-G solvation = -6.500493 kcal Electronic energy + Delta-G solvation = -11802.999611 eV Core-core repulsion = 9890.905952 eV Total energy + Delta-G solvation = -1912.093659 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.58154 -33.65471 -31.28034 -30.49548 -28.26203 -24.72583 -23.93527 -22.96506 -19.52771 -17.76088 -17.25470 -15.32984 -14.67026 -13.93312 -13.34901 -13.33380 -13.19531 -12.45717 -12.01357 -11.60744 -11.11127 -10.84138 -10.79514 -10.42525 -10.23360 -10.15222 -9.97371 -9.89547 -9.76805 -9.62236 -9.39103 -8.80121 -6.84884 -5.70591 -2.97193 3.46343 3.51988 3.53103 4.64694 5.23780 5.26975 5.35595 5.66502 5.87403 5.94504 6.02654 6.10985 6.13657 6.18675 6.32678 6.36743 6.50103 6.59252 6.65180 6.68741 6.80345 6.91668 6.96865 7.10756 7.20408 7.54977 7.76863 8.48895 9.59797 10.20225 10.55409 11.52287 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.054845 B = 0.012692 C = 0.012191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.402807 B = 2205.535159 C = 2296.288027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.054 0.946 4 C -0.115 4.115 5 C -0.135 4.135 6 C 0.176 3.824 7 H 0.051 0.949 8 N -0.713 5.713 9 C -0.228 4.228 10 H 0.068 0.932 11 C -0.015 4.015 12 N -0.934 5.934 13 Si 0.902 3.098 14 H -0.291 1.291 15 H -0.293 1.293 16 H -0.283 1.283 17 C -0.115 4.115 18 H 0.049 0.951 19 C -0.121 4.121 20 H 0.067 0.933 21 H 0.049 0.951 22 H 0.038 0.962 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.383 0.617 28 H 0.253 0.747 29 H 0.047 0.953 30 H 0.024 0.976 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.053 9.337 -1.162 9.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.073 0.927 4 C -0.153 4.153 5 C -0.174 4.174 6 C 0.065 3.935 7 H 0.069 0.931 8 N -0.353 5.353 9 C -0.360 4.360 10 H 0.086 0.914 11 C -0.211 4.211 12 N -0.583 5.583 13 Si 0.733 3.267 14 H -0.219 1.219 15 H -0.219 1.219 16 H -0.209 1.209 17 C -0.137 4.137 18 H 0.068 0.932 19 C -0.178 4.178 20 H 0.086 0.914 21 H 0.068 0.932 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.217 0.783 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.089 9.208 -1.006 9.495 hybrid contribution -0.251 -0.698 0.564 0.932 sum 1.837 8.510 -0.441 8.717 Atomic orbital electron populations 1.21958 0.95751 1.02419 0.99884 1.21680 0.95395 0.97883 0.95587 0.92730 1.22382 0.97910 0.98467 0.96552 1.22818 0.96654 0.99323 0.98613 1.21038 0.92610 0.86801 0.93056 0.93093 1.42336 1.51809 1.20167 1.21006 1.19223 1.20715 0.99465 0.96554 0.91386 1.24681 1.00108 0.98651 0.97659 1.69652 1.31978 1.28077 1.28639 0.86259 0.77492 0.80956 0.81944 1.21882 1.21935 1.20902 1.22494 0.97999 0.97786 0.95419 0.93222 1.21687 0.97536 0.98696 0.99856 0.91450 0.93202 0.94288 0.93174 0.91512 0.92385 0.91591 0.78266 0.93666 0.93378 0.95742 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 7.88 37.16 0.29 -1.98 16 2 C -0.09 -1.41 3.50 -89.50 -0.31 -1.72 16 3 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 4 C -0.12 -1.88 6.22 -25.07 -0.16 -2.04 16 5 C -0.14 -2.35 6.50 -24.74 -0.16 -2.51 16 6 C 0.18 3.58 3.44 -66.27 -0.23 3.35 16 7 H 0.05 1.06 8.06 -51.93 -0.42 0.64 16 8 N -0.71 -17.59 3.77 -51.82 -0.20 -17.78 16 9 C -0.23 -6.23 8.50 -15.06 -0.13 -6.36 16 10 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 11 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 12 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 13 Si 0.90 22.49 29.55 -169.99 -5.02 17.47 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 C -0.12 -2.11 3.47 -89.50 -0.31 -2.42 16 18 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 19 C -0.12 -2.40 6.83 37.16 0.25 -2.15 16 20 H 0.07 1.22 6.63 -51.93 -0.34 0.88 16 21 H 0.05 0.75 6.84 -51.93 -0.36 0.39 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 1.19 7.75 -51.93 -0.40 0.78 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.38 10.13 7.67 -40.82 -0.31 9.82 16 28 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.05 1.03 7.59 -51.93 -0.39 0.63 16 30 H 0.02 0.42 6.82 -51.93 -0.35 0.07 16 31 H 0.08 1.73 5.72 -51.93 -0.30 1.43 16 LS Contribution 241.62 15.07 3.64 3.64 Total: -1.00 -28.47 241.62 -6.66 -35.13 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.96 Total: 5.28 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -0.85 Total: -16.38 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.53 Total: -45.13 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.47 -6.66 -35.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083044614.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.628 kcal (2) G-P(sol) polarization free energy of solvation -28.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds