Wall clock time and date at job start Mon Mar 30 2020 02:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.05876 * 2 1 4 4 C 1.54265 * 110.03114 * 238.57856 * 2 1 3 5 5 C 1.54892 * 104.19470 * 217.10632 * 4 2 1 6 6 C 1.54886 * 102.74899 * 37.94504 * 5 4 2 7 7 H 1.09002 * 110.48874 * 203.24438 * 6 5 4 8 8 N 1.46506 * 110.48725 * 80.73402 * 6 5 4 9 9 C 1.36941 * 119.99572 * 150.77875 * 8 6 5 10 10 H 1.07993 * 120.00306 * 359.72419 * 9 8 6 11 11 C 1.38813 * 119.99469 * 179.72354 * 9 8 6 12 12 N 1.31614 * 120.00343 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99749 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46900 * 90.00288 * 13 11 9 15 15 H 1.48501 * 109.47108 * 209.99980 * 13 11 9 16 16 H 1.48501 * 109.47267 * 330.00234 * 13 11 9 17 17 C 1.53877 * 110.02914 * 121.41413 * 2 1 3 18 18 H 1.09002 * 110.02986 * 238.56486 * 17 2 1 19 19 C 1.53001 * 110.03457 * 359.97438 * 17 2 1 20 20 H 1.09004 * 109.47249 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46782 * 299.96667 * 1 2 3 22 22 H 1.08998 * 109.47041 * 59.96429 * 1 2 3 23 23 H 1.08997 * 110.48469 * 98.43021 * 4 2 1 24 24 H 1.09003 * 110.48425 * 335.78303 * 4 2 1 25 25 H 1.08995 * 110.75806 * 279.62903 * 5 4 2 26 26 H 1.09003 * 110.75399 * 156.25793 * 5 4 2 27 27 H 0.96992 * 120.00105 * 330.50196 * 8 6 5 28 28 H 0.96996 * 120.00143 * 179.97438 * 12 11 9 29 29 H 1.09002 * 109.46775 * 179.24694 * 19 17 2 30 30 H 1.09001 * 109.47095 * 299.24441 * 19 17 2 31 31 H 1.08995 * 109.46878 * 59.24778 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0584 -0.7556 -1.2368 5 6 3.3137 -1.5008 -0.7190 6 6 2.8874 -1.9407 0.7036 7 1 3.7637 -2.1060 1.3305 8 7 2.0671 -3.1529 0.6413 9 6 2.0734 -4.0383 1.6860 10 1 2.6864 -3.8452 2.5538 11 6 1.2917 -5.1840 1.6294 12 7 0.5449 -5.4196 0.5716 13 14 1.3008 -6.3922 3.0541 14 1 0.2429 -6.0183 4.0268 15 1 1.0415 -7.7621 2.5430 16 1 2.6251 -6.3564 3.7250 17 6 2.0571 -0.7535 1.2338 18 1 2.6867 -0.0953 1.8325 19 6 0.8861 -1.2663 2.0746 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5133 0.8903 22 1 -0.3633 0.5144 -0.8897 23 1 2.3297 -0.0538 -2.0254 24 1 1.3142 -1.4661 -1.5965 25 1 4.1710 -0.8292 -0.6750 26 1 3.5325 -2.3680 -1.3421 27 1 1.5164 -3.3263 -0.1381 28 1 -0.0010 -6.2204 0.5319 29 1 1.2695 -1.8096 2.9382 30 1 0.2853 -0.4224 2.4136 31 1 0.2695 -1.9321 1.4708 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083044614.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:02 Heat of formation + Delta-G solvation = -23.141539 kcal Electronic energy + Delta-G solvation = -11803.721221 eV Core-core repulsion = 9890.905952 eV Total energy + Delta-G solvation = -1912.815269 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.07456 -35.56902 -32.98680 -32.12799 -29.94715 -26.44674 -25.41497 -24.77317 -21.02612 -19.37994 -19.12407 -16.87231 -16.55405 -15.60159 -15.17863 -14.87747 -14.72455 -14.04801 -13.59152 -13.08012 -12.94952 -12.79738 -12.40165 -12.16343 -12.05498 -11.66363 -11.51172 -11.47031 -11.32064 -11.15655 -10.98360 -10.80669 -8.88328 -7.88059 -5.13077 1.47135 1.47829 1.55799 2.59510 3.44496 3.83578 3.90478 3.97102 4.28041 4.57177 4.61240 4.68228 4.74578 4.79415 4.94290 4.99154 5.03634 5.10936 5.23139 5.26827 5.34425 5.47820 5.50084 5.54960 5.65296 5.69476 5.94265 6.35091 7.40836 8.20514 8.43583 9.35812 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.054845 B = 0.012692 C = 0.012191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.402807 B = 2205.535159 C = 2296.288027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 H 0.085 0.915 4 C -0.112 4.112 5 C -0.127 4.127 6 C 0.161 3.839 7 H 0.044 0.956 8 N -0.721 5.721 9 C -0.219 4.219 10 H 0.070 0.930 11 C -0.077 4.077 12 N -0.971 5.971 13 Si 0.962 3.038 14 H -0.291 1.291 15 H -0.299 1.299 16 H -0.272 1.272 17 C -0.112 4.112 18 H 0.071 0.929 19 C -0.112 4.112 20 H 0.034 0.966 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.050 0.950 27 H 0.372 0.628 28 H 0.247 0.753 29 H 0.024 0.976 30 H 0.048 0.952 31 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.903 11.245 -0.959 11.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 H 0.103 0.897 4 C -0.150 4.150 5 C -0.166 4.166 6 C 0.052 3.948 7 H 0.062 0.938 8 N -0.360 5.360 9 C -0.351 4.351 10 H 0.088 0.912 11 C -0.269 4.269 12 N -0.623 5.623 13 Si 0.792 3.208 14 H -0.218 1.218 15 H -0.225 1.225 16 H -0.197 1.197 17 C -0.133 4.133 18 H 0.089 0.911 19 C -0.169 4.169 20 H 0.053 0.947 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.099 0.901 24 H 0.061 0.939 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.204 0.796 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.975 11.158 -0.787 11.575 hybrid contribution -0.472 -1.212 0.504 1.395 sum 2.503 9.946 -0.282 10.260 Atomic orbital electron populations 1.21895 0.95731 1.00704 1.01333 1.21691 0.95399 0.98967 0.94028 0.89688 1.22361 0.96646 0.98459 0.97491 1.22756 0.98293 0.99474 0.96063 1.21349 0.92082 0.86047 0.95304 0.93829 1.42453 1.52250 1.21415 1.19877 1.19514 1.19292 0.99448 0.96856 0.91239 1.25385 1.00765 1.00711 1.00036 1.69804 1.33394 1.28481 1.30592 0.85292 0.77751 0.78471 0.79247 1.21849 1.22546 1.19691 1.22423 0.97198 0.97246 0.96459 0.91076 1.21563 0.98025 0.98690 0.98616 0.94732 0.92346 0.92274 0.90114 0.93891 0.89304 0.93140 0.79639 0.94370 0.95685 0.93322 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 7.88 71.98 0.57 -3.58 16 2 C -0.08 -2.41 3.50 -10.07 -0.04 -2.45 16 3 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.11 -3.37 6.22 31.67 0.20 -3.17 16 5 C -0.13 -4.16 6.50 31.88 0.21 -3.95 16 6 C 0.16 6.39 3.44 46.06 0.16 6.55 16 7 H 0.04 1.77 8.06 -2.39 -0.02 1.75 16 8 N -0.72 -36.04 3.77 -317.85 -1.20 -37.24 16 9 C -0.22 -12.10 8.50 84.03 0.71 -11.38 16 10 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 11 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 12 N -0.97 -59.95 13.06 21.65 0.28 -59.66 16 13 Si 0.96 46.92 29.55 68.60 2.03 48.95 16 14 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 15 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 16 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 17 C -0.11 -3.86 3.47 -10.07 -0.03 -3.90 16 18 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 19 C -0.11 -4.38 6.83 71.98 0.49 -3.89 16 20 H 0.03 1.24 6.63 -2.38 -0.02 1.23 16 21 H 0.06 1.61 6.84 -2.38 -0.02 1.59 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.04 1.49 7.75 -2.39 -0.02 1.47 16 25 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.37 20.22 7.67 -92.71 -0.71 19.51 16 28 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.02 1.05 7.59 -2.39 -0.02 1.03 16 30 H 0.05 1.63 6.82 -2.39 -0.02 1.61 16 31 H 0.04 1.95 5.72 -2.39 -0.01 1.94 16 Total: -1.00 -61.40 241.62 4.23 -57.18 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.38 Total: 20.53 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 2.73 Total: -29.76 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -0.92 Total: -96.90 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -61.40 4.23 -57.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083044614.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.036 kcal (2) G-P(sol) polarization free energy of solvation -61.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds