Wall clock time and date at job start Mon Mar 30 2020 02:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.05840 * 2 1 4 4 C 1.54263 * 110.03234 * 238.58331 * 2 1 3 5 5 C 1.54888 * 104.20142 * 217.10606 * 4 2 1 6 6 C 1.54895 * 102.74386 * 37.94484 * 5 4 2 7 7 H 1.08998 * 110.60435 * 80.79226 * 6 5 4 8 8 N 1.46503 * 110.48575 * 203.38328 * 6 5 4 9 9 C 1.36940 * 119.99793 * 269.77128 * 8 6 5 10 10 H 1.07998 * 119.99864 * 0.02562 * 9 8 6 11 11 C 1.38806 * 119.99942 * 179.97438 * 9 8 6 12 12 N 1.31625 * 120.00331 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 120.00036 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46997 * 90.00261 * 13 11 9 15 15 H 1.48497 * 109.47084 * 210.00465 * 13 11 9 16 16 H 1.48496 * 109.46742 * 330.00527 * 13 11 9 17 17 C 1.53879 * 110.03051 * 121.42151 * 2 1 3 18 18 H 1.09006 * 110.06642 * 238.59024 * 17 2 1 19 19 C 1.52997 * 110.03255 * 359.97438 * 17 2 1 20 20 H 1.09001 * 109.47016 * 298.58307 * 1 2 3 21 21 H 1.09003 * 109.47294 * 58.58133 * 1 2 3 22 22 H 1.09001 * 109.47517 * 178.57796 * 1 2 3 23 23 H 1.09000 * 110.49241 * 98.42897 * 4 2 1 24 24 H 1.09002 * 110.49024 * 335.78535 * 4 2 1 25 25 H 1.08998 * 110.75908 * 279.63545 * 5 4 2 26 26 H 1.09001 * 110.91780 * 156.32650 * 5 4 2 27 27 H 0.96999 * 120.00250 * 89.77241 * 8 6 5 28 28 H 0.96994 * 119.99921 * 180.02562 * 12 11 9 29 29 H 1.09002 * 109.47153 * 178.62236 * 19 17 2 30 30 H 1.09001 * 109.46832 * 58.62426 * 19 17 2 31 31 H 1.09004 * 109.47261 * 298.62408 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2368 5 6 3.3136 -1.5008 -0.7192 6 6 2.8873 -1.9408 0.7034 7 1 2.2776 -2.8432 0.6593 8 7 4.0650 -2.1600 1.5468 9 6 4.6457 -3.3989 1.6033 10 1 4.2356 -4.2142 1.0259 11 6 5.7619 -3.6065 2.4019 12 7 6.2619 -2.6126 3.1053 13 14 6.5544 -5.2964 2.4785 14 1 7.5959 -5.4028 1.4254 15 1 7.1774 -5.4909 3.8123 16 1 5.5198 -6.3386 2.2585 17 6 2.0570 -0.7537 1.2337 18 1 2.6864 -0.0959 1.8332 19 6 0.8861 -1.2665 2.0744 20 1 -0.3633 0.4917 0.9024 21 1 -0.3634 0.5357 -0.8770 22 1 -0.3634 -1.0273 -0.0255 23 1 2.3297 -0.0537 -2.0255 24 1 1.3142 -1.4660 -1.5967 25 1 4.1709 -0.8292 -0.6751 26 1 3.5355 -2.3678 -1.3414 27 1 4.4335 -1.4276 2.0651 28 1 7.0421 -2.7577 3.6630 29 1 1.2692 -1.8194 2.9320 30 1 0.2633 -1.9235 1.4673 31 1 0.2915 -0.4219 2.4227 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083044618.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:05 Heat of formation + Delta-G solvation = -29.966416 kcal Electronic energy + Delta-G solvation = -11477.582180 eV Core-core repulsion = 9564.470962 eV Total energy + Delta-G solvation = -1913.111218 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.98453 -35.87494 -33.09969 -32.15757 -30.09678 -26.49518 -25.44359 -24.42859 -21.38514 -19.87312 -18.81313 -17.24793 -16.18042 -15.83285 -15.01587 -14.90810 -14.59394 -14.40400 -13.33974 -13.15610 -12.95016 -12.80767 -12.58832 -12.37059 -12.17671 -11.94298 -11.63525 -11.52136 -11.33227 -11.26866 -10.98872 -10.85468 -8.96322 -7.94176 -5.21967 1.45405 1.47489 1.55867 2.55994 3.37832 3.76682 3.79237 3.95573 4.26781 4.49185 4.57644 4.62246 4.64152 4.73390 4.84600 4.85817 5.02197 5.08371 5.20527 5.20903 5.26143 5.40992 5.46753 5.48739 5.56000 5.63031 5.73551 6.28991 7.33505 8.12586 8.35058 9.29652 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.068893 B = 0.010140 C = 0.009676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.329694 B = 2760.791926 C = 2893.174907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 H 0.069 0.931 4 C -0.108 4.108 5 C -0.143 4.143 6 C 0.169 3.831 7 H 0.046 0.954 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.073 0.927 11 C -0.080 4.080 12 N -0.972 5.972 13 Si 0.972 3.028 14 H -0.288 1.288 15 H -0.295 1.295 16 H -0.269 1.269 17 C -0.099 4.099 18 H 0.049 0.951 19 C -0.133 4.133 20 H 0.061 0.939 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.370 0.630 28 H 0.250 0.750 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.536 4.168 -6.753 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.145 4.145 5 C -0.183 4.183 6 C 0.061 3.939 7 H 0.064 0.936 8 N -0.374 5.374 9 C -0.370 4.370 10 H 0.091 0.909 11 C -0.271 4.271 12 N -0.623 5.623 13 Si 0.801 3.199 14 H -0.215 1.215 15 H -0.221 1.221 16 H -0.194 1.194 17 C -0.118 4.118 18 H 0.067 0.933 19 C -0.190 4.190 20 H 0.080 0.920 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.202 0.798 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.532 3.968 -6.768 13.947 hybrid contribution 1.188 -0.616 0.527 1.439 sum -10.344 3.352 -6.240 12.536 Atomic orbital electron populations 1.21931 0.93411 1.02157 1.02071 1.21695 0.96899 0.98564 0.93401 0.91210 1.22348 0.96280 0.98842 0.97079 1.23058 0.97846 0.99112 0.98288 1.21422 0.87226 0.95652 0.89633 0.93633 1.42674 1.32041 1.09454 1.53224 1.19646 1.07494 0.89258 1.20594 0.90909 1.25566 0.99957 1.01235 1.00384 1.69826 1.26039 1.32410 1.34009 0.85149 0.78401 0.79848 0.76455 1.21484 1.22146 1.19420 1.21991 0.96610 0.96329 0.96891 0.93276 1.21858 0.97308 1.01016 0.98782 0.91967 0.91788 0.92235 0.90922 0.90712 0.93804 0.93361 0.79795 0.94108 0.95353 0.91527 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.89 71.98 0.57 -2.28 16 2 C -0.09 -2.30 3.50 -10.07 -0.04 -2.34 16 3 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 4 C -0.11 -2.93 6.36 31.67 0.20 -2.73 16 5 C -0.14 -5.27 6.58 31.89 0.21 -5.06 16 6 C 0.17 7.01 3.06 46.07 0.14 7.15 16 7 H 0.05 1.94 7.80 -2.39 -0.02 1.92 16 8 N -0.73 -38.87 5.20 -317.85 -1.65 -40.52 16 9 C -0.24 -13.70 9.96 84.03 0.84 -12.86 16 10 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 11 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 12 N -0.97 -61.18 13.06 21.65 0.28 -60.90 16 13 Si 0.97 47.33 29.55 68.60 2.03 49.35 16 14 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 15 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 17 C -0.10 -3.36 3.23 -10.07 -0.03 -3.39 16 18 H 0.05 1.86 7.73 -2.38 -0.02 1.84 16 19 C -0.13 -3.98 7.88 71.98 0.57 -3.41 16 20 H 0.06 1.19 6.78 -2.39 -0.02 1.17 16 21 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.06 1.21 6.68 -2.39 -0.02 1.20 16 23 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.07 1.83 7.84 -2.39 -0.02 1.81 16 25 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.37 21.08 7.56 -92.71 -0.70 20.38 16 28 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.80 6.65 -2.39 -0.02 1.78 16 31 H 0.07 1.79 6.82 -2.38 -0.02 1.77 16 Total: -1.00 -64.17 245.93 3.97 -60.20 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.39 Total: 21.03 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 2.92 Total: -29.16 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -1.37 Total: -101.42 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -64.17 3.97 -60.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083044618.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.236 kcal (2) G-P(sol) polarization free energy of solvation -64.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds