Wall clock time and date at job start Mon Mar 30 2020 02:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.70486 * 2 1 4 4 C 1.53626 * 109.74105 * 239.45189 * 2 1 3 5 5 C 1.53042 * 109.24163 * 295.11817 * 4 2 1 6 6 C 1.53040 * 109.53577 * 298.50901 * 5 4 2 7 7 H 1.08990 * 109.52662 * 301.39601 * 6 5 4 8 8 C 1.53008 * 109.49406 * 181.31324 * 6 5 4 9 9 C 1.53188 * 109.31368 * 61.36819 * 6 5 4 10 10 N 1.46927 * 108.77455 * 305.36227 * 9 6 5 11 11 C 1.36936 * 120.63108 * 233.58941 * 10 9 6 12 12 H 1.08004 * 120.00484 * 152.62553 * 11 10 9 13 13 C 1.38812 * 119.99899 * 332.62254 * 11 10 9 14 14 N 1.31614 * 119.99970 * 342.38571 * 13 11 10 15 15 Si 1.86801 * 120.00029 * 162.38654 * 13 11 10 16 16 H 1.48501 * 109.47367 * 84.98372 * 15 13 11 17 17 H 1.48508 * 109.47190 * 324.98455 * 15 13 11 18 18 H 1.48504 * 109.47366 * 204.98598 * 15 13 11 19 19 H 1.08997 * 109.46764 * 299.64319 * 1 2 3 20 20 H 1.08996 * 109.47005 * 59.64535 * 1 2 3 21 21 H 1.08992 * 109.46822 * 179.64805 * 1 2 3 22 22 H 1.09004 * 109.63654 * 175.12925 * 4 2 1 23 23 H 1.08996 * 109.45884 * 55.00253 * 4 2 1 24 24 H 1.08996 * 109.46207 * 178.48805 * 5 4 2 25 25 H 1.09001 * 109.45016 * 58.52342 * 5 4 2 26 26 H 1.08994 * 109.47117 * 300.16254 * 8 6 5 27 27 H 1.08999 * 109.46714 * 60.16755 * 8 6 5 28 28 H 1.09006 * 109.46746 * 180.16146 * 8 6 5 29 29 H 1.09001 * 109.59108 * 185.57403 * 9 6 5 30 30 H 1.09003 * 109.59182 * 65.14719 * 9 6 5 31 31 H 0.97003 * 120.00203 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0489 -0.7349 -1.2453 5 6 1.6419 -2.2082 -1.1676 6 6 2.2758 -2.8497 0.0689 7 1 3.3601 -2.7548 0.0132 8 6 1.8950 -4.3305 0.1279 9 6 1.7644 -2.1399 1.3264 10 7 2.0226 -0.6995 1.1945 11 6 2.7044 -0.0208 2.1689 12 1 3.2690 0.8645 1.9162 13 6 2.6700 -0.4707 3.4817 14 7 1.7349 -1.3144 3.8639 15 14 3.9508 0.1214 4.7058 16 1 3.5174 1.4170 5.2881 17 1 5.2521 0.3007 4.0130 18 1 4.1012 -0.8827 5.7896 19 1 -0.3633 0.5083 0.8932 20 1 -0.3633 0.5193 -0.8868 21 1 -0.3633 -1.0276 -0.0063 22 1 3.1354 -0.6595 -1.2889 23 1 1.6167 -0.2848 -2.1389 24 1 1.9851 -2.7274 -2.0623 25 1 0.5566 -2.2818 -1.0989 26 1 0.8106 -4.4248 0.1825 27 1 2.2592 -4.8351 -0.7670 28 1 2.3444 -4.7862 1.0102 29 1 2.2864 -2.5260 2.2019 30 1 0.6930 -2.3108 1.4324 31 1 1.7110 -1.6290 4.7811 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084047559.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:40 Heat of formation + Delta-G solvation = -17.269859 kcal Electronic energy + Delta-G solvation = -11916.684683 eV Core-core repulsion = 10004.124029 eV Total energy + Delta-G solvation = -1912.560654 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.70833 -35.24587 -34.20296 -31.76717 -29.22393 -27.44773 -25.68652 -23.78854 -21.91895 -19.84317 -18.56285 -16.88360 -16.00995 -15.52106 -15.23760 -14.84184 -14.43928 -14.01469 -13.68090 -13.06238 -12.91987 -12.86994 -12.72374 -12.56555 -12.32122 -12.08131 -11.79316 -11.59583 -11.29538 -11.00234 -10.88218 -10.48934 -8.62511 -7.84452 -5.28549 1.44846 1.46416 1.55827 2.51703 3.28157 3.69380 4.04313 4.20155 4.21663 4.42983 4.56795 4.71168 4.83478 4.86407 4.90645 5.04422 5.05902 5.10083 5.20014 5.23496 5.35063 5.50420 5.51667 5.60337 5.61510 5.74103 5.90270 6.42683 7.18403 7.92874 8.43744 9.20607 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.044290 B = 0.015347 C = 0.013238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.044813 B = 1823.972749 C = 2114.658262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.152 3.848 3 H 0.050 0.950 4 C -0.120 4.120 5 C -0.100 4.100 6 C -0.114 4.114 7 H 0.048 0.952 8 C -0.133 4.133 9 C 0.188 3.812 10 N -0.606 5.606 11 C -0.262 4.262 12 H 0.062 0.938 13 C -0.052 4.052 14 N -0.934 5.934 15 Si 0.964 3.036 16 H -0.283 1.283 17 H -0.273 1.273 18 H -0.292 1.292 19 H 0.022 0.978 20 H 0.073 0.927 21 H 0.044 0.956 22 H 0.048 0.952 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.046 0.954 30 H -0.007 1.007 31 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.053 -2.051 -9.204 9.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.045 3.955 3 H 0.069 0.931 4 C -0.158 4.158 5 C -0.137 4.137 6 C -0.134 4.134 7 H 0.067 0.933 8 C -0.191 4.191 9 C 0.062 3.938 10 N -0.328 5.328 11 C -0.393 4.393 12 H 0.080 0.920 13 C -0.247 4.247 14 N -0.580 5.580 15 Si 0.792 3.208 16 H -0.210 1.210 17 H -0.198 1.198 18 H -0.219 1.219 19 H 0.041 0.959 20 H 0.091 0.909 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.011 0.989 31 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.040 -2.098 -9.046 9.286 hybrid contribution 0.428 0.316 1.259 1.367 sum 0.469 -1.782 -7.787 8.002 Atomic orbital electron populations 1.22109 0.97767 1.00734 1.00094 1.20876 0.92549 0.94807 0.87240 0.93121 1.21957 1.00125 0.96249 0.97505 1.21462 1.00042 0.95321 0.96897 1.21686 0.99260 0.95592 0.96892 0.93309 1.21680 1.01129 0.94723 1.01541 1.20576 0.95293 0.82983 0.94958 1.44424 1.64236 1.04275 1.19847 1.19496 1.21955 1.10026 0.87782 0.91999 1.25750 0.99646 1.00865 0.98416 1.70197 1.33459 1.37565 1.16769 0.85352 0.79644 0.77222 0.78595 1.20982 1.19807 1.21856 0.95884 0.90858 0.93663 0.93274 0.90017 0.90814 0.92369 0.92967 0.90929 0.93879 0.93582 0.98867 0.94254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.73 9.03 71.98 0.65 -5.08 16 2 C 0.15 6.39 3.31 45.12 0.15 6.54 16 3 H 0.05 2.17 7.93 -2.39 -0.02 2.15 16 4 C -0.12 -4.05 5.58 30.82 0.17 -3.88 16 5 C -0.10 -3.25 4.96 30.62 0.15 -3.09 16 6 C -0.11 -4.40 2.87 -10.71 -0.03 -4.43 16 7 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 8 C -0.13 -4.25 9.20 71.98 0.66 -3.58 16 9 C 0.19 9.33 4.18 86.36 0.36 9.69 16 10 N -0.61 -31.32 2.70 -674.42 -1.82 -33.14 16 11 C -0.26 -14.94 9.59 84.03 0.81 -14.14 16 12 H 0.06 3.46 7.89 -2.91 -0.02 3.43 16 13 C -0.05 -2.97 4.91 84.86 0.42 -2.55 16 14 N -0.93 -56.73 11.18 21.65 0.24 -56.49 16 15 Si 0.96 46.10 29.59 68.60 2.03 48.13 16 16 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 19 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 20 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 21 H 0.04 1.76 5.71 -2.39 -0.01 1.75 16 22 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 23 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.06 1.88 6.49 -2.39 -0.02 1.87 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.05 2.62 6.02 -2.39 -0.01 2.61 16 30 H -0.01 -0.36 7.48 -2.39 -0.02 -0.37 16 31 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -63.41 241.51 4.86 -58.55 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: 1.07 Total: 3.48 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 3.34 Total: -20.53 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -1.58 Total: -89.63 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -63.41 4.86 -58.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084047559.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.280 kcal (2) G-P(sol) polarization free energy of solvation -63.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds