Wall clock time and date at job start Mon Mar 30 2020 01:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47217 * 2 1 4 4 C 1.53006 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46997 * 300.00398 * 4 3 2 6 6 N 1.46899 * 109.47248 * 299.99818 * 5 4 3 7 7 C 1.50706 * 109.46573 * 180.02562 * 5 4 3 8 8 H 1.07995 * 120.00167 * 359.72054 * 7 5 4 9 9 C 1.37879 * 119.99394 * 179.97438 * 7 5 4 10 10 N 1.31514 * 120.00338 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 119.99424 * 180.02562 * 9 7 5 12 12 H 1.48490 * 109.47405 * 60.00219 * 11 9 7 13 13 H 1.48503 * 109.46845 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47399 * 299.99813 * 11 9 7 15 15 C 1.52997 * 109.47317 * 60.00177 * 5 4 3 16 16 C 1.52996 * 109.47131 * 299.99507 * 15 5 4 17 17 H 1.09001 * 109.47364 * 59.99209 * 1 2 3 18 18 H 1.08995 * 109.47843 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.46785 * 299.99710 * 1 2 3 20 20 H 1.09004 * 109.46785 * 240.00290 * 2 1 3 21 21 H 1.08996 * 109.46698 * 60.00426 * 3 2 1 22 22 H 1.09001 * 109.47142 * 300.00372 * 3 2 1 23 23 H 1.09000 * 109.46866 * 180.02562 * 4 3 2 24 24 H 1.09001 * 109.46611 * 60.00303 * 4 3 2 25 25 H 1.00897 * 111.00272 * 180.02562 * 6 5 4 26 26 H 1.00903 * 110.99644 * 303.95985 * 6 5 4 27 27 H 0.96996 * 119.99730 * 179.97438 * 10 9 7 28 28 H 1.08996 * 109.46952 * 59.99813 * 15 5 4 29 29 H 1.09001 * 109.46832 * 179.97438 * 15 5 4 30 30 H 1.09000 * 109.47380 * 300.00763 * 16 15 5 31 31 H 1.09000 * 109.47054 * 180.02562 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0805 0.7209 1.2482 6 7 3.5914 1.4131 2.4480 7 6 5.5876 0.7214 1.2478 8 1 6.1272 1.1855 0.4356 9 6 6.2773 0.1246 2.2818 10 7 5.6202 -0.4454 3.2681 11 14 8.1453 0.1259 2.2817 12 1 8.6394 1.5262 2.2819 13 1 8.6408 -0.5745 3.4938 14 1 8.6408 -0.5737 1.0691 15 6 3.5705 -0.7216 1.2481 16 6 2.0405 -0.7216 1.2489 17 1 -0.3634 0.5140 -0.8899 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8901 20 1 1.8933 -0.5138 -0.8901 21 1 1.6767 1.9562 0.8900 22 1 1.6766 1.9564 -0.8900 23 1 3.9334 2.4701 -0.0002 24 1 3.9329 0.9287 -0.8909 25 1 3.9156 0.9557 3.2869 26 1 3.8609 2.3855 2.4395 27 1 6.1055 -0.8655 3.9953 28 1 3.9334 -1.2352 0.3579 29 1 3.9346 -1.2357 2.1377 30 1 1.6776 -0.2078 2.1391 31 1 1.6772 -1.7492 1.2493 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084328499.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:36 Heat of formation + Delta-G solvation = -47.600427 kcal Electronic energy + Delta-G solvation = -11898.484837 eV Core-core repulsion = 9984.608951 eV Total energy + Delta-G solvation = -1913.875886 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.75098 -35.76693 -33.22511 -31.25483 -30.08386 -27.91553 -25.17657 -23.21830 -21.42798 -19.70482 -18.42290 -16.81129 -15.87548 -15.62574 -15.13241 -14.61519 -14.51138 -13.74021 -13.43359 -13.24475 -12.88233 -12.73742 -12.57143 -12.51149 -11.91406 -11.84841 -11.70108 -11.49176 -11.22414 -10.92808 -10.43104 -10.32434 -8.93747 -7.97026 -6.25021 1.37159 1.39030 1.45620 2.40032 3.13151 4.09876 4.15735 4.26822 4.57392 4.69480 4.76167 4.87921 4.94924 5.00392 5.08699 5.17332 5.19113 5.25025 5.35496 5.53146 5.57868 5.65011 5.69069 5.88195 6.01828 6.14261 6.31321 6.78155 7.16138 7.27614 7.53240 8.89978 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.073233 B = 0.012643 C = 0.012044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.247718 B = 2214.087428 C = 2324.249950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 C -0.095 4.095 4 C -0.097 4.097 5 C 0.229 3.771 6 N -0.832 5.832 7 C -0.565 4.565 8 H 0.038 0.962 9 C 0.028 3.972 10 N -0.904 5.904 11 Si 0.945 3.055 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.279 1.279 15 C -0.095 4.095 16 C -0.096 4.096 17 H 0.063 0.937 18 H 0.056 0.944 19 H 0.052 0.948 20 H 0.053 0.947 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.340 0.660 26 H 0.310 0.690 27 H 0.262 0.738 28 H 0.017 0.983 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.261 1.150 -3.934 7.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 C -0.132 4.132 4 C -0.135 4.135 5 C 0.138 3.862 6 N -0.360 5.360 7 C -0.604 4.604 8 H 0.056 0.944 9 C -0.172 4.172 10 N -0.543 5.543 11 Si 0.772 3.228 12 H -0.202 1.202 13 H -0.209 1.209 14 H -0.205 1.205 15 C -0.133 4.133 16 C -0.134 4.134 17 H 0.082 0.918 18 H 0.075 0.925 19 H 0.071 0.929 20 H 0.072 0.928 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.154 0.846 26 H 0.118 0.882 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.976 0.844 -4.032 8.101 hybrid contribution 2.519 -0.014 0.348 2.543 sum -4.457 0.830 -3.684 5.842 Atomic orbital electron populations 1.21754 0.94054 1.01690 1.01840 1.21067 0.96055 0.96070 0.97285 1.21403 0.94555 0.96293 1.00969 1.21476 0.95996 0.98553 0.97498 1.18316 0.89310 0.90733 0.87863 1.59439 1.65238 1.04770 1.06533 1.22281 0.94852 1.36593 1.06718 0.94369 1.25577 1.01755 0.94412 0.95468 1.69787 1.36106 1.37596 1.10832 0.85829 0.81821 0.77976 0.77176 1.20218 1.20866 1.20494 1.21359 0.94232 0.98328 0.99426 1.21434 0.95641 0.98194 0.98137 0.91826 0.92475 0.92920 0.92823 0.91931 0.92252 0.94292 0.94334 0.84570 0.88179 0.92813 0.96433 0.92477 0.92574 0.93865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.19 71.98 0.66 -2.99 16 2 C -0.09 -2.93 2.72 -10.79 -0.03 -2.96 16 3 C -0.09 -3.36 5.05 30.60 0.15 -3.21 16 4 C -0.10 -4.11 4.79 30.60 0.15 -3.97 16 5 C 0.23 11.12 0.52 2.78 0.00 11.13 16 6 N -0.83 -39.01 7.32 -154.52 -1.13 -40.15 16 7 C -0.56 -30.68 8.20 25.60 0.21 -30.47 16 8 H 0.04 2.11 7.74 -2.91 -0.02 2.09 16 9 C 0.03 1.50 5.21 84.66 0.44 1.94 16 10 N -0.90 -49.36 9.54 21.45 0.20 -49.16 16 11 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 C -0.09 -4.57 4.66 30.59 0.14 -4.43 16 16 C -0.10 -3.84 5.05 30.59 0.15 -3.68 16 17 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 18 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 19 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 20 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 21 H 0.06 2.30 7.60 -2.39 -0.02 2.29 16 22 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.34 17.41 6.93 -89.70 -0.62 16.79 16 26 H 0.31 14.04 8.98 -89.69 -0.81 13.24 16 27 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 28 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 30 H 0.06 2.34 7.60 -2.39 -0.02 2.32 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -54.79 239.63 2.66 -52.14 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: -0.32 Total: 30.41 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 1.88 Total: -38.63 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -0.93 Total: -89.30 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -54.79 2.66 -52.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328499.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.536 kcal (2) G-P(sol) polarization free energy of solvation -54.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds