Wall clock time and date at job start Mon Mar 30 2020 01:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53514 * 114.17147 * 2 1 4 4 N 1.47470 * 87.93187 * 87.81454 * 3 2 1 5 5 C 1.46901 * 111.00419 * 138.70507 * 4 3 2 6 6 C 1.52992 * 109.47859 * 170.00112 * 5 4 3 7 7 C 1.52997 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47094 * 90.00289 * 12 10 8 14 14 H 1.48505 * 109.47195 * 210.00171 * 12 10 8 15 15 H 1.48493 * 109.47449 * 330.00136 * 12 10 8 16 16 C 1.47485 * 87.83976 * 27.01193 * 4 3 2 17 17 H 1.08999 * 109.47168 * 59.99611 * 1 2 3 18 18 H 1.09000 * 109.47358 * 179.97438 * 1 2 3 19 19 H 1.09003 * 109.46992 * 300.00052 * 1 2 3 20 20 H 1.09004 * 113.25309 * 227.05319 * 2 1 3 21 21 H 1.09001 * 113.47213 * 333.04908 * 3 2 1 22 22 H 1.08994 * 113.47633 * 202.58439 * 3 2 1 23 23 H 1.09002 * 109.46980 * 49.99771 * 5 4 3 24 24 H 1.09001 * 109.46628 * 290.00192 * 5 4 3 25 25 H 1.09002 * 109.47103 * 59.99734 * 6 5 4 26 26 H 1.08998 * 109.46862 * 300.00546 * 6 5 4 27 27 H 1.09002 * 109.47153 * 59.99783 * 7 6 5 28 28 H 1.09001 * 109.46832 * 299.99974 * 7 6 5 29 29 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 30 30 H 1.08995 * 113.47551 * 87.74830 * 16 4 3 31 31 H 1.08998 * 113.47679 * 218.22920 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1586 1.4005 0.0000 4 7 2.0855 1.3750 1.4727 5 6 3.3049 1.9356 2.0702 6 6 3.0961 2.1235 3.5741 7 6 4.3663 2.7068 4.1964 8 6 4.1604 2.8925 5.6777 9 1 3.2180 2.6212 6.1301 10 6 5.1756 3.4077 6.4555 11 7 6.3233 3.7375 5.9047 12 14 4.9206 3.6372 8.2917 13 1 5.3349 2.4036 9.0070 14 1 5.7385 4.7826 8.7657 15 1 3.4859 3.9081 8.5622 16 6 2.1629 -0.0958 1.3953 17 1 -0.3633 0.5139 -0.8899 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.9603 -0.6823 -0.7331 21 1 1.5233 2.1616 -0.4531 22 1 3.1785 1.4187 -0.3839 23 1 3.5247 2.8992 1.6106 24 1 4.1385 1.2539 1.9015 25 1 2.8762 1.1599 4.0336 26 1 2.2624 2.8051 3.7427 27 1 4.5866 3.6703 3.7369 28 1 5.1997 2.0248 4.0277 29 1 7.0374 4.1004 6.4519 30 1 3.1840 -0.4769 1.3837 31 1 1.5311 -0.6028 2.1247 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681668.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:57 Heat of formation + Delta-G solvation = 12.710435 kcal Electronic energy + Delta-G solvation = -10905.755448 eV Core-core repulsion = 8994.494837 eV Total energy + Delta-G solvation = -1911.260611 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.99410 -34.32001 -32.34032 -30.25861 -27.03552 -25.80234 -24.49416 -22.05526 -20.01737 -18.86783 -16.44384 -15.63416 -15.25741 -14.71553 -14.36240 -13.47096 -13.11642 -12.70988 -12.29711 -11.99464 -11.89105 -11.36519 -11.04530 -10.82754 -10.62797 -10.49545 -10.35886 -10.28080 -9.58578 -9.24429 -9.01340 -8.55632 -8.30770 -5.96106 -3.97917 3.34823 3.40599 3.44958 4.25699 4.42676 4.50489 4.94782 5.23376 5.39322 5.41471 5.42392 5.56959 5.73868 5.75812 5.88211 5.96043 5.98438 6.09977 6.34439 6.37320 6.51290 6.83632 6.91093 7.22301 7.42694 7.72958 7.88104 8.04740 8.48700 9.09355 9.65864 11.15479 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.097586 B = 0.006843 C = 0.006591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 286.856925 B = 4091.002222 C = 4246.933168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C -0.003 4.003 4 N -0.470 5.470 5 C 0.019 3.981 6 C -0.098 4.098 7 C 0.021 3.979 8 C -0.518 4.518 9 H 0.055 0.945 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.002 3.998 17 H 0.054 0.946 18 H 0.053 0.947 19 H 0.067 0.933 20 H 0.076 0.924 21 H 0.080 0.920 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.039 0.961 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.015 0.985 28 H 0.013 0.987 29 H 0.260 0.740 30 H 0.067 0.933 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.812 -6.513 -10.809 14.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C -0.132 4.132 4 N -0.192 5.192 5 C -0.109 4.109 6 C -0.136 4.136 7 C -0.017 4.017 8 C -0.556 4.556 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.128 4.128 17 H 0.073 0.927 18 H 0.072 0.928 19 H 0.086 0.914 20 H 0.095 0.905 21 H 0.098 0.902 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.166 -6.075 -10.383 14.540 hybrid contribution 0.894 -0.131 0.690 1.137 sum -7.273 -6.206 -9.693 13.615 Atomic orbital electron populations 1.21461 0.93115 1.01335 1.02420 1.22580 0.96773 0.97297 0.97568 1.23842 1.00021 0.97458 0.91868 1.68936 1.35684 1.07369 1.07222 1.22855 0.90115 0.99361 0.98524 1.21504 1.00806 1.00377 0.90943 1.19094 0.91608 0.95821 0.95178 1.21271 0.99381 1.41676 0.93264 0.92668 1.25033 0.95252 0.95634 0.98631 1.69970 1.04131 1.44001 1.35630 0.86589 0.78154 0.77667 0.85574 1.20697 1.21237 1.19847 1.23907 1.00249 0.91761 0.96846 0.92665 0.92817 0.91433 0.90537 0.90172 0.91765 0.91527 0.94272 0.93625 0.92788 0.96690 0.96889 0.93072 0.91511 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.72 37.16 0.36 -0.94 16 2 C -0.12 -1.41 4.76 -90.09 -0.43 -1.84 16 3 C 0.00 -0.03 7.26 -7.55 -0.05 -0.09 16 4 N -0.47 -7.58 6.14 -244.63 -1.50 -9.08 16 5 C 0.02 0.36 4.82 -3.83 -0.02 0.34 16 6 C -0.10 -2.18 5.48 -26.74 -0.15 -2.33 16 7 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 8 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 9 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 12 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 C 0.00 0.02 7.25 -7.54 -0.05 -0.03 16 17 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 18 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 19 H 0.07 0.80 7.93 -51.93 -0.41 0.39 16 20 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 22 H 0.06 0.80 7.91 -51.93 -0.41 0.39 16 23 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 24 H 0.04 0.71 7.30 -51.93 -0.38 0.33 16 25 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.07 0.91 7.42 -51.93 -0.39 0.53 16 31 H 0.08 1.12 8.12 -51.93 -0.42 0.69 16 LS Contribution 257.03 15.07 3.87 3.87 Total: -1.00 -30.74 257.03 -8.16 -38.89 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: -5.35 Total: -5.47 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -0.89 Total: -18.48 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.77 Total: -35.98 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.74 -8.16 -38.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681668.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.605 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds