Wall clock time and date at job start Mon Mar 30 2020 01:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53514 * 114.17147 * 2 1 4 4 N 1.47470 * 87.93187 * 87.81454 * 3 2 1 5 5 C 1.46901 * 111.00419 * 138.70507 * 4 3 2 6 6 C 1.52992 * 109.47859 * 170.00112 * 5 4 3 7 7 C 1.52997 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47094 * 90.00289 * 12 10 8 14 14 H 1.48505 * 109.47195 * 210.00171 * 12 10 8 15 15 H 1.48493 * 109.47449 * 330.00136 * 12 10 8 16 16 C 1.47485 * 87.83976 * 27.01193 * 4 3 2 17 17 H 1.08999 * 109.47168 * 59.99611 * 1 2 3 18 18 H 1.09000 * 109.47358 * 179.97438 * 1 2 3 19 19 H 1.09003 * 109.46992 * 300.00052 * 1 2 3 20 20 H 1.09004 * 113.25309 * 227.05319 * 2 1 3 21 21 H 1.09001 * 113.47213 * 333.04908 * 3 2 1 22 22 H 1.08994 * 113.47633 * 202.58439 * 3 2 1 23 23 H 1.09002 * 109.46980 * 49.99771 * 5 4 3 24 24 H 1.09001 * 109.46628 * 290.00192 * 5 4 3 25 25 H 1.09002 * 109.47103 * 59.99734 * 6 5 4 26 26 H 1.08998 * 109.46862 * 300.00546 * 6 5 4 27 27 H 1.09002 * 109.47153 * 59.99783 * 7 6 5 28 28 H 1.09001 * 109.46832 * 299.99974 * 7 6 5 29 29 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 30 30 H 1.08995 * 113.47551 * 87.74830 * 16 4 3 31 31 H 1.08998 * 113.47679 * 218.22920 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1586 1.4005 0.0000 4 7 2.0855 1.3750 1.4727 5 6 3.3049 1.9356 2.0702 6 6 3.0961 2.1235 3.5741 7 6 4.3663 2.7068 4.1964 8 6 4.1604 2.8925 5.6777 9 1 3.2180 2.6212 6.1301 10 6 5.1756 3.4077 6.4555 11 7 6.3233 3.7375 5.9047 12 14 4.9206 3.6372 8.2917 13 1 5.3349 2.4036 9.0070 14 1 5.7385 4.7826 8.7657 15 1 3.4859 3.9081 8.5622 16 6 2.1629 -0.0958 1.3953 17 1 -0.3633 0.5139 -0.8899 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.9603 -0.6823 -0.7331 21 1 1.5233 2.1616 -0.4531 22 1 3.1785 1.4187 -0.3839 23 1 3.5247 2.8992 1.6106 24 1 4.1385 1.2539 1.9015 25 1 2.8762 1.1599 4.0336 26 1 2.2624 2.8051 3.7427 27 1 4.5866 3.6703 3.7369 28 1 5.1997 2.0248 4.0277 29 1 7.0374 4.1004 6.4519 30 1 3.1840 -0.4769 1.3837 31 1 1.5311 -0.6028 2.1247 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681668.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:57 Heat of formation + Delta-G solvation = -7.813855 kcal Electronic energy + Delta-G solvation = -10906.645448 eV Core-core repulsion = 8994.494837 eV Total energy + Delta-G solvation = -1912.150611 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.12159 -36.23744 -34.22774 -31.73745 -28.66095 -26.87731 -26.10676 -23.70775 -21.86227 -19.85821 -18.54887 -17.00822 -16.62317 -16.43839 -15.88951 -14.95816 -14.44788 -14.15452 -13.84365 -13.51265 -13.29879 -12.82894 -12.78772 -12.51180 -12.20653 -12.06563 -11.82124 -11.45546 -11.34780 -11.26222 -10.96902 -10.57676 -9.78257 -8.22308 -6.33898 1.38646 1.40586 1.52106 2.39762 3.10439 3.11318 3.44801 3.93105 4.03376 4.17476 4.34118 4.52338 4.59694 4.67797 4.69635 4.77356 4.87405 5.02938 5.06369 5.07863 5.18208 5.24228 5.43821 5.49642 5.53093 5.72712 5.82443 6.11498 6.25855 6.82283 7.35456 8.89773 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.097586 B = 0.006843 C = 0.006591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 286.856925 B = 4091.002222 C = 4246.933168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C -0.005 4.005 4 N -0.490 5.490 5 C 0.031 3.969 6 C -0.083 4.083 7 C 0.025 3.975 8 C -0.546 4.546 9 H 0.057 0.943 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.968 3.032 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.264 1.264 16 C -0.007 4.007 17 H 0.068 0.932 18 H 0.069 0.931 19 H 0.047 0.953 20 H 0.101 0.899 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.040 0.960 25 H 0.043 0.957 26 H 0.046 0.954 27 H -0.009 1.009 28 H -0.009 1.009 29 H 0.265 0.735 30 H 0.068 0.932 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.764 -7.201 -10.990 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.124 4.124 3 C -0.134 4.134 4 N -0.212 5.212 5 C -0.097 4.097 6 C -0.121 4.121 7 C -0.012 4.012 8 C -0.584 4.584 9 H 0.075 0.925 10 C -0.198 4.198 11 N -0.574 5.574 12 Si 0.792 3.208 13 H -0.196 1.196 14 H -0.204 1.204 15 H -0.189 1.189 16 C -0.136 4.136 17 H 0.087 0.913 18 H 0.088 0.912 19 H 0.066 0.934 20 H 0.119 0.881 21 H 0.106 0.894 22 H 0.089 0.911 23 H 0.081 0.919 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.010 0.990 28 H 0.009 0.991 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.133 -6.772 -10.580 15.530 hybrid contribution 1.194 0.076 0.705 1.388 sum -7.939 -6.696 -9.875 14.331 Atomic orbital electron populations 1.21468 0.92253 1.02329 1.02137 1.22564 0.97326 0.96348 0.96204 1.23955 1.00865 0.98976 0.89567 1.68896 1.33952 1.08926 1.09453 1.22601 0.91550 0.99594 0.95990 1.21249 0.97892 0.99489 0.93508 1.18989 0.93134 0.94329 0.94782 1.21688 0.99777 1.42303 0.94649 0.92469 1.26009 0.94747 0.94906 1.04162 1.70096 1.05058 1.44440 1.37799 0.85406 0.78545 0.78041 0.78815 1.19573 1.20440 1.18864 1.24023 1.00674 0.90195 0.98673 0.91268 0.91234 0.93371 0.88128 0.89439 0.91121 0.91886 0.94194 0.93795 0.93475 0.99025 0.99053 0.92664 0.91419 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 9.72 71.98 0.70 -1.55 16 2 C -0.11 -2.13 4.76 -10.45 -0.05 -2.18 16 3 C 0.00 -0.12 7.26 83.58 0.61 0.49 16 4 N -0.49 -15.33 6.14 -927.88 -5.70 -21.03 16 5 C 0.03 1.16 4.82 86.30 0.42 1.57 16 6 C -0.08 -3.76 5.48 30.59 0.17 -3.59 16 7 C 0.03 1.41 4.97 29.85 0.15 1.55 16 8 C -0.55 -32.59 9.11 25.60 0.23 -32.36 16 9 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 10 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 11 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 12 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 15 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 16 C -0.01 -0.17 7.25 83.58 0.61 0.43 16 17 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 18 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 19 H 0.05 1.06 7.93 -2.39 -0.02 1.04 16 20 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 21 H 0.09 1.97 8.11 -2.39 -0.02 1.95 16 22 H 0.07 1.62 7.91 -2.39 -0.02 1.60 16 23 H 0.06 2.35 8.08 -2.39 -0.02 2.33 16 24 H 0.04 1.45 7.30 -2.39 -0.02 1.44 16 25 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 27 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 28 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.07 1.76 7.42 -2.39 -0.02 1.74 16 31 H 0.08 2.09 8.12 -2.39 -0.02 2.07 16 Total: -1.00 -65.61 257.03 0.96 -64.65 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: 1.06 Total: 2.08 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 3.29 Total: -35.21 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -5.42 Total: -78.94 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -65.61 0.96 -64.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681668.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.838 kcal (2) G-P(sol) polarization free energy of solvation -65.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds