Wall clock time and date at job start Mon Mar 30 2020 01:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47403 * 2 1 4 4 C 1.52999 * 109.47267 * 120.00385 * 2 1 3 5 5 H 1.08999 * 110.91584 * 297.54734 * 4 2 1 6 6 C 1.55154 * 111.00486 * 173.64602 * 4 2 1 7 7 C 1.54322 * 102.94204 * 206.41955 * 6 4 2 8 8 N 1.47019 * 107.27223 * 22.19795 * 7 6 4 9 9 C 1.36937 * 125.65303 * 181.07962 * 8 7 6 10 10 H 1.08000 * 120.00279 * 179.97438 * 9 8 7 11 11 C 1.38819 * 119.99449 * 359.97092 * 9 8 7 12 12 N 1.31612 * 120.00226 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99518 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47350 * 59.99910 * 13 11 9 15 15 H 1.48500 * 109.46806 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47110 * 299.99832 * 13 11 9 17 17 C 1.47426 * 108.70209 * 1.05519 * 8 7 6 18 18 H 1.08994 * 109.47259 * 59.99509 * 1 2 3 19 19 H 1.09000 * 109.47323 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46861 * 299.99470 * 1 2 3 21 21 H 1.09008 * 109.46518 * 240.00159 * 2 1 3 22 22 H 1.08996 * 109.47293 * 180.02562 * 3 2 1 23 23 H 1.09002 * 109.46755 * 300.00725 * 3 2 1 24 24 H 1.08995 * 109.46997 * 59.99938 * 3 2 1 25 25 H 1.08999 * 110.71557 * 88.06051 * 6 4 2 26 26 H 1.08995 * 110.87338 * 324.85869 * 6 4 2 27 27 H 1.09001 * 109.88768 * 262.77536 * 7 6 4 28 28 H 1.09003 * 109.87844 * 141.61039 * 7 6 4 29 29 H 0.97002 * 120.00454 * 179.97438 * 12 11 9 30 30 H 1.08998 * 110.36718 * 94.71247 * 17 8 7 31 31 H 1.09005 * 110.36600 * 217.03808 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7258 -0.2015 2.1542 6 6 3.5826 -0.8824 1.2075 7 6 3.8232 -2.1331 2.0789 8 7 2.5681 -2.8983 2.1002 9 6 2.3574 -4.0673 2.7815 10 1 1.3947 -4.5545 2.7334 11 6 3.3813 -4.6262 3.5341 12 7 4.5547 -4.0327 3.5923 13 14 3.0942 -6.2212 4.4630 14 1 2.7276 -7.2937 3.5035 15 1 4.3350 -6.6048 5.1831 16 1 1.9920 -6.0333 5.4403 17 6 1.5735 -2.1984 1.2668 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 1.8933 -0.5139 -0.8901 22 1 3.1300 1.4424 -0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6768 1.9563 0.8899 25 1 4.0731 -0.0106 1.6405 26 1 3.9281 -1.0506 0.1875 27 1 4.0918 -1.8332 3.0919 28 1 4.6194 -2.7388 1.6460 29 1 5.2700 -4.4230 4.1184 30 1 1.5701 -2.6072 0.2564 31 1 0.5819 -2.2777 1.7125 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108282348.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:21 Heat of formation + Delta-G solvation = 2.741765 kcal Electronic energy + Delta-G solvation = -11515.724304 eV Core-core repulsion = 9604.031419 eV Total energy + Delta-G solvation = -1911.692885 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.02444 -34.58932 -31.79931 -29.11105 -27.51863 -26.44122 -24.33368 -21.19210 -19.85162 -19.12805 -16.76594 -14.95707 -14.55400 -14.21438 -13.77679 -12.99867 -12.75474 -12.24592 -12.04499 -11.82119 -11.66885 -11.09924 -11.02604 -10.77501 -10.69031 -10.38478 -10.06559 -9.81165 -9.68445 -9.60828 -9.45654 -8.52018 -6.73076 -5.63134 -2.95955 3.44834 3.48498 3.50182 4.56478 5.13857 5.21269 5.26868 5.56092 5.71701 5.80573 5.87311 5.92851 6.01718 6.05249 6.12571 6.18679 6.38153 6.47538 6.54494 6.58689 6.69625 6.74820 6.89965 7.13798 7.64512 7.74461 7.91288 8.35435 9.30929 9.91830 10.59567 11.48604 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.080414 B = 0.010347 C = 0.009382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.116644 B = 2705.423722 C = 2983.574066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.143 4.143 4 C -0.097 4.097 5 H 0.070 0.930 6 C -0.139 4.139 7 C 0.177 3.823 8 N -0.608 5.608 9 C -0.226 4.226 10 H 0.076 0.924 11 C -0.011 4.011 12 N -0.923 5.923 13 Si 0.911 3.089 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.142 3.858 18 H 0.046 0.954 19 H 0.057 0.943 20 H 0.051 0.949 21 H 0.066 0.934 22 H 0.055 0.945 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.251 0.749 30 H 0.016 0.984 31 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.617 7.986 -5.814 10.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.201 4.201 4 C -0.117 4.117 5 H 0.089 0.911 6 C -0.177 4.177 7 C 0.052 3.948 8 N -0.335 5.335 9 C -0.355 4.355 10 H 0.094 0.906 11 C -0.207 4.207 12 N -0.571 5.571 13 Si 0.742 3.258 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.212 1.212 17 C 0.016 3.984 18 H 0.065 0.935 19 H 0.076 0.924 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.482 7.831 -5.664 10.654 hybrid contribution -0.055 -0.873 0.539 1.028 sum -4.537 6.958 -5.125 9.760 Atomic orbital electron populations 1.21838 0.95768 1.01815 1.00842 1.21074 0.95268 0.95719 0.98411 1.21815 1.01149 0.96248 1.00870 1.22375 0.96160 0.96529 0.96597 0.91149 1.22900 0.94937 0.99731 1.00150 1.21126 0.88612 0.88189 0.96829 1.44514 1.08702 1.24844 1.55410 1.19036 0.97377 0.97405 1.21670 0.90605 1.24806 0.95971 0.99210 1.00711 1.69969 1.02632 1.39814 1.44709 0.86203 0.76747 0.83220 0.79624 1.21241 1.21621 1.21235 1.21569 0.92992 0.89899 0.93966 0.93479 0.92412 0.93004 0.91509 0.92634 0.93456 0.93033 0.92597 0.92750 0.93861 0.94269 0.93822 0.96657 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.99 37.16 0.33 -1.57 16 2 C -0.09 -1.25 2.43 -90.62 -0.22 -1.47 16 3 C -0.14 -1.81 9.04 37.16 0.34 -1.48 16 4 C -0.10 -1.78 2.56 -88.47 -0.23 -2.01 16 5 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 6 C -0.14 -2.74 5.58 -24.90 -0.14 -2.88 16 7 C 0.18 4.54 5.37 -3.07 -0.02 4.52 16 8 N -0.61 -16.43 3.39 -170.07 -0.58 -17.00 16 9 C -0.23 -6.60 10.28 -15.06 -0.15 -6.75 16 10 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 11 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 12 N -0.92 -28.10 10.31 55.49 0.57 -27.52 16 13 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 C 0.14 3.10 5.66 -2.53 -0.01 3.08 16 18 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 19 H 0.06 0.79 7.27 -51.93 -0.38 0.41 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.07 0.99 8.11 -51.92 -0.42 0.57 16 22 H 0.05 0.71 7.50 -51.93 -0.39 0.32 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 26 H 0.05 1.01 8.02 -51.93 -0.42 0.60 16 27 H 0.04 1.22 7.38 -51.93 -0.38 0.83 16 28 H 0.04 1.10 7.51 -51.93 -0.39 0.71 16 29 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.02 0.34 8.04 -51.93 -0.42 -0.08 16 31 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 LS Contribution 246.85 15.07 3.72 3.72 Total: -1.00 -30.72 246.85 -6.80 -37.52 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: -5.29 Total: -5.46 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -0.20 Total: -8.97 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.01 Total: -44.53 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.72 -6.80 -37.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108282348.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.266 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds