Wall clock time and date at job start Mon Mar 30 2020 01:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47403 * 2 1 4 4 C 1.52999 * 109.47267 * 120.00385 * 2 1 3 5 5 H 1.08999 * 110.91584 * 297.54734 * 4 2 1 6 6 C 1.55154 * 111.00486 * 173.64602 * 4 2 1 7 7 C 1.54322 * 102.94204 * 206.41955 * 6 4 2 8 8 N 1.47019 * 107.27223 * 22.19795 * 7 6 4 9 9 C 1.36937 * 125.65303 * 181.07962 * 8 7 6 10 10 H 1.08000 * 120.00279 * 179.97438 * 9 8 7 11 11 C 1.38819 * 119.99449 * 359.97092 * 9 8 7 12 12 N 1.31612 * 120.00226 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99518 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47350 * 59.99910 * 13 11 9 15 15 H 1.48500 * 109.46806 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47110 * 299.99832 * 13 11 9 17 17 C 1.47426 * 108.70209 * 1.05519 * 8 7 6 18 18 H 1.08994 * 109.47259 * 59.99509 * 1 2 3 19 19 H 1.09000 * 109.47323 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46861 * 299.99470 * 1 2 3 21 21 H 1.09008 * 109.46518 * 240.00159 * 2 1 3 22 22 H 1.08996 * 109.47293 * 180.02562 * 3 2 1 23 23 H 1.09002 * 109.46755 * 300.00725 * 3 2 1 24 24 H 1.08995 * 109.46997 * 59.99938 * 3 2 1 25 25 H 1.08999 * 110.71557 * 88.06051 * 6 4 2 26 26 H 1.08995 * 110.87338 * 324.85869 * 6 4 2 27 27 H 1.09001 * 109.88768 * 262.77536 * 7 6 4 28 28 H 1.09003 * 109.87844 * 141.61039 * 7 6 4 29 29 H 0.97002 * 120.00454 * 179.97438 * 12 11 9 30 30 H 1.08998 * 110.36718 * 94.71247 * 17 8 7 31 31 H 1.09005 * 110.36600 * 217.03808 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7258 -0.2015 2.1542 6 6 3.5826 -0.8824 1.2075 7 6 3.8232 -2.1331 2.0789 8 7 2.5681 -2.8983 2.1002 9 6 2.3574 -4.0673 2.7815 10 1 1.3947 -4.5545 2.7334 11 6 3.3813 -4.6262 3.5341 12 7 4.5547 -4.0327 3.5923 13 14 3.0942 -6.2212 4.4630 14 1 2.7276 -7.2937 3.5035 15 1 4.3350 -6.6048 5.1831 16 1 1.9920 -6.0333 5.4403 17 6 1.5735 -2.1984 1.2668 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 1.8933 -0.5139 -0.8901 22 1 3.1300 1.4424 -0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6768 1.9563 0.8899 25 1 4.0731 -0.0106 1.6405 26 1 3.9281 -1.0506 0.1875 27 1 4.0918 -1.8332 3.0919 28 1 4.6194 -2.7388 1.6460 29 1 5.2700 -4.4230 4.1184 30 1 1.5701 -2.6072 0.2564 31 1 0.5819 -2.2777 1.7125 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108282348.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:21 Heat of formation + Delta-G solvation = -15.740072 kcal Electronic energy + Delta-G solvation = -11516.525736 eV Core-core repulsion = 9604.031419 eV Total energy + Delta-G solvation = -1912.494317 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.66367 -36.20854 -33.75487 -31.00188 -29.08729 -27.70009 -26.34309 -22.65696 -21.82831 -20.51575 -18.86131 -16.84957 -16.30687 -15.83867 -15.35059 -14.39062 -14.08755 -14.01017 -13.64767 -13.51861 -12.97768 -12.88797 -12.68845 -12.40304 -12.26005 -12.02663 -11.79807 -11.63930 -11.29287 -11.19984 -11.06269 -10.70854 -8.89801 -7.85246 -5.21276 1.43639 1.48029 1.54385 2.49279 3.31928 3.67799 3.86714 3.99434 4.11032 4.38120 4.54749 4.59871 4.70164 4.78489 4.91457 4.96313 5.03378 5.08702 5.13243 5.20766 5.34993 5.41966 5.45199 5.54842 5.63250 5.69886 5.78465 6.19947 7.09910 7.78304 8.44006 9.25199 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.080414 B = 0.010347 C = 0.009382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.116644 B = 2705.423722 C = 2983.574066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.140 4.140 4 C -0.083 4.083 5 H 0.067 0.933 6 C -0.124 4.124 7 C 0.183 3.817 8 N -0.633 5.633 9 C -0.247 4.247 10 H 0.082 0.918 11 C -0.071 4.071 12 N -0.953 5.953 13 Si 0.982 3.018 14 H -0.276 1.276 15 H -0.293 1.293 16 H -0.276 1.276 17 C 0.137 3.863 18 H 0.070 0.930 19 H 0.046 0.954 20 H 0.054 0.946 21 H 0.067 0.933 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.007 0.993 28 H 0.002 0.998 29 H 0.247 0.753 30 H 0.020 0.980 31 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 8.857 -6.637 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 C -0.198 4.198 4 C -0.102 4.102 5 H 0.085 0.915 6 C -0.162 4.162 7 C 0.058 3.942 8 N -0.359 5.359 9 C -0.376 4.376 10 H 0.099 0.901 11 C -0.263 4.263 12 N -0.602 5.602 13 Si 0.810 3.190 14 H -0.202 1.202 15 H -0.219 1.219 16 H -0.201 1.201 17 C 0.012 3.988 18 H 0.089 0.911 19 H 0.065 0.935 20 H 0.073 0.927 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.025 0.975 28 H 0.020 0.980 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.694 8.720 -6.511 12.282 hybrid contribution 0.291 -1.145 0.773 1.412 sum -5.403 7.575 -5.738 10.931 Atomic orbital electron populations 1.21821 0.94468 1.01584 1.02211 1.21038 0.96339 0.96580 0.95963 1.21789 1.01069 0.94725 1.02184 1.22314 0.94704 0.94507 0.98711 0.91493 1.22770 0.96473 0.97348 0.99649 1.20919 0.87551 0.89997 0.95770 1.44887 1.10302 1.24892 1.55848 1.19478 0.97708 0.98504 1.21898 0.90064 1.25735 0.95785 1.02852 1.01967 1.70209 1.03347 1.41277 1.45407 0.85098 0.76598 0.79016 0.78300 1.20215 1.21858 1.20143 1.21774 0.92111 0.91808 0.93110 0.91116 0.93479 0.92689 0.91467 0.92791 0.91252 0.92681 0.90474 0.91338 0.97474 0.98015 0.94417 0.96197 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.99 71.98 0.65 -2.67 16 2 C -0.08 -2.10 2.43 -10.79 -0.03 -2.13 16 3 C -0.14 -3.02 9.04 71.98 0.65 -2.37 16 4 C -0.08 -2.90 2.56 -9.40 -0.02 -2.93 16 5 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 6 C -0.12 -4.77 5.58 31.78 0.18 -4.59 16 7 C 0.18 9.63 5.37 86.73 0.47 10.09 16 8 N -0.63 -34.71 3.39 -691.98 -2.35 -37.06 16 9 C -0.25 -14.59 10.28 84.04 0.86 -13.73 16 10 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 11 C -0.07 -4.21 5.49 84.86 0.47 -3.74 16 12 N -0.95 -59.86 10.31 21.65 0.22 -59.64 16 13 Si 0.98 47.28 29.55 68.60 2.03 49.31 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 17 C 0.14 5.89 5.66 86.86 0.49 6.38 16 18 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 19 H 0.05 1.18 7.27 -2.39 -0.02 1.16 16 20 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 21 H 0.07 1.78 8.11 -2.38 -0.02 1.76 16 22 H 0.05 1.18 7.50 -2.39 -0.02 1.16 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 2.64 8.13 -2.39 -0.02 2.62 16 26 H 0.07 2.44 8.02 -2.39 -0.02 2.42 16 27 H 0.01 0.41 7.38 -2.39 -0.02 0.40 16 28 H 0.00 0.09 7.51 -2.39 -0.02 0.08 16 29 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.02 0.85 8.04 -2.39 -0.02 0.83 16 31 H 0.04 1.57 8.05 -2.38 -0.02 1.55 16 Total: -1.00 -67.20 246.85 4.68 -62.52 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: 1.06 Total: 0.55 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 3.71 Total: -15.69 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -2.13 Total: -96.70 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -67.20 4.68 -62.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108282348.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.780 kcal (2) G-P(sol) polarization free energy of solvation -67.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds