Wall clock time and date at job start Mon Mar 30 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47022 * 2 1 4 4 C 1.53004 * 109.46899 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.88605 * 54.30159 * 4 3 2 6 6 C 1.55158 * 111.00209 * 178.17968 * 4 3 2 7 7 C 1.54330 * 102.94056 * 153.61337 * 6 4 3 8 8 N 1.47022 * 107.27093 * 337.81035 * 7 6 4 9 9 C 1.36938 * 125.64698 * 178.97778 * 8 7 6 10 10 H 1.07999 * 120.00108 * 179.97438 * 9 8 7 11 11 C 1.38816 * 119.99955 * 359.97229 * 9 8 7 12 12 N 1.31614 * 120.00062 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99717 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47580 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.47038 * 120.00304 * 13 11 9 16 16 H 1.48498 * 109.47218 * 240.00183 * 13 11 9 17 17 C 1.47523 * 108.71559 * 358.93837 * 8 7 6 18 18 H 1.09009 * 109.46929 * 299.99566 * 1 2 3 19 19 H 1.09001 * 109.47488 * 59.99187 * 1 2 3 20 20 H 1.08999 * 109.47525 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46908 * 240.00483 * 2 1 3 22 22 H 1.08995 * 109.47400 * 120.00108 * 2 1 3 23 23 H 1.08999 * 109.46884 * 60.00468 * 3 2 1 24 24 H 1.08995 * 109.47121 * 300.00279 * 3 2 1 25 25 H 1.08996 * 110.72495 * 271.98095 * 6 4 3 26 26 H 1.09006 * 110.72015 * 35.08119 * 6 4 3 27 27 H 1.08998 * 109.87833 * 97.22798 * 7 6 4 28 28 H 1.08997 * 109.88366 * 218.39206 * 7 6 4 29 29 H 0.97002 * 120.00021 * 180.02562 * 12 11 9 30 30 H 1.09001 * 110.37251 * 265.30968 * 17 8 7 31 31 H 1.09004 * 110.41044 * 142.95250 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9582 0.8484 -0.8279 6 6 4.1260 2.8903 -0.0467 7 6 5.5081 2.7512 0.6259 8 7 5.4686 1.5398 1.4581 9 6 6.5063 1.0515 2.2064 10 1 6.3761 0.1500 2.7867 11 6 7.7254 1.7152 2.2191 12 7 7.8839 2.8140 1.5122 13 14 9.1406 1.0494 3.2404 14 1 8.7085 -0.1883 3.9378 15 1 10.2900 0.7408 2.3521 16 1 9.5488 2.0661 4.2429 17 6 4.1258 0.9378 1.3543 18 1 -0.3633 0.5138 0.8901 19 1 -0.3634 0.5140 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 1.8932 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8899 23 1 1.6766 1.9563 0.8900 24 1 1.6765 1.9564 -0.8899 25 1 4.2310 3.2306 -1.0768 26 1 3.4856 3.5676 0.5184 27 1 6.2824 2.6533 -0.1349 28 1 5.7063 3.6230 1.2495 29 1 8.7359 3.2776 1.5208 30 1 3.4931 1.2778 2.1742 31 1 4.1959 -0.1500 1.3540 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133083705.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:25 Heat of formation + Delta-G solvation = -0.265333 kcal Electronic energy + Delta-G solvation = -11334.376975 eV Core-core repulsion = 9422.553692 eV Total energy + Delta-G solvation = -1911.823282 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.75435 -34.53337 -32.19932 -29.59339 -28.17601 -25.46657 -23.78715 -21.29206 -19.81299 -19.35722 -16.72493 -15.33477 -14.59511 -14.32384 -13.84243 -13.16772 -12.72948 -12.36765 -12.10453 -11.80308 -11.43096 -11.16095 -10.99296 -10.79883 -10.71042 -10.47547 -10.03568 -9.77257 -9.71043 -9.60895 -9.48728 -8.53217 -6.73634 -5.64017 -2.96731 3.43643 3.48741 3.51529 4.56159 5.05579 5.18493 5.32584 5.50730 5.59002 5.68098 5.71101 5.89772 5.99795 6.06566 6.13581 6.21685 6.28846 6.42009 6.52620 6.57945 6.67100 6.75043 6.88369 7.12577 7.64613 7.73867 7.90980 8.34579 9.30324 9.91109 10.58785 11.47985 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.076573 B = 0.009465 C = 0.008604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.575534 B = 2957.683833 C = 3253.645448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.104 4.104 5 H 0.070 0.930 6 C -0.141 4.141 7 C 0.177 3.823 8 N -0.609 5.609 9 C -0.225 4.225 10 H 0.077 0.923 11 C -0.012 4.012 12 N -0.923 5.923 13 Si 0.911 3.089 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.142 3.858 18 H 0.051 0.949 19 H 0.050 0.950 20 H 0.049 0.951 21 H 0.058 0.942 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.250 0.750 30 H 0.016 0.984 31 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 -2.691 -3.297 11.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.124 4.124 5 H 0.089 0.911 6 C -0.179 4.179 7 C 0.053 3.947 8 N -0.335 5.335 9 C -0.354 4.354 10 H 0.095 0.905 11 C -0.208 4.208 12 N -0.572 5.572 13 Si 0.742 3.258 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.218 1.218 17 C 0.016 3.984 18 H 0.071 0.929 19 H 0.069 0.931 20 H 0.068 0.932 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.487 -2.638 -3.239 11.289 hybrid contribution 0.837 -0.254 0.517 1.016 sum -9.650 -2.892 -2.722 10.435 Atomic orbital electron populations 1.21781 0.96544 1.01039 1.01448 1.21550 0.95017 0.97610 1.02126 1.21542 0.95349 0.96086 1.01316 1.22363 0.93512 0.97432 0.99070 0.91135 1.22910 0.99606 0.95513 0.99889 1.21117 0.90706 0.89603 0.93303 1.44558 1.07842 1.27076 1.54049 1.19138 0.89470 1.06741 1.20003 0.90475 1.24808 0.97852 0.97660 1.00441 1.69993 1.23978 1.18867 1.44326 0.86048 0.82464 0.77911 0.79400 1.20540 1.21806 1.21799 1.21601 0.87452 0.95952 0.93431 0.92939 0.93111 0.93219 0.92322 0.91770 0.92205 0.92611 0.92572 0.92714 0.93821 0.94234 0.93913 0.96610 0.94714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.15 0.37 -1.26 16 2 C -0.13 -1.63 5.81 -26.73 -0.16 -1.78 16 3 C -0.10 -1.53 4.72 -26.73 -0.13 -1.65 16 4 C -0.10 -1.92 3.04 -88.47 -0.27 -2.19 16 5 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 6 C -0.14 -2.79 6.42 -24.89 -0.16 -2.95 16 7 C 0.18 4.56 5.37 -3.06 -0.02 4.54 16 8 N -0.61 -16.46 3.40 -169.99 -0.58 -17.03 16 9 C -0.22 -6.56 10.28 -15.06 -0.15 -6.72 16 10 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 11 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 12 N -0.92 -28.17 10.31 55.49 0.57 -27.60 16 13 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 17 C 0.14 3.09 6.04 -2.48 -0.01 3.08 16 18 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 19 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 20 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.88 7.59 -51.93 -0.39 0.48 16 23 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 27 H 0.04 1.23 7.38 -51.93 -0.38 0.85 16 28 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 29 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.02 0.35 7.96 -51.93 -0.41 -0.06 16 31 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 249.41 15.07 3.76 3.76 Total: -1.00 -30.84 249.41 -7.23 -38.08 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: -5.34 Total: -5.55 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -0.62 Total: -9.37 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.01 Total: -44.63 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.84 -7.23 -38.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133083705.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.810 kcal (2) G-P(sol) polarization free energy of solvation -30.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds