Wall clock time and date at job start Mon Mar 30 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47022 * 2 1 4 4 C 1.53004 * 109.46899 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.88605 * 54.30159 * 4 3 2 6 6 C 1.55158 * 111.00209 * 178.17968 * 4 3 2 7 7 C 1.54330 * 102.94056 * 153.61337 * 6 4 3 8 8 N 1.47022 * 107.27093 * 337.81035 * 7 6 4 9 9 C 1.36938 * 125.64698 * 178.97778 * 8 7 6 10 10 H 1.07999 * 120.00108 * 179.97438 * 9 8 7 11 11 C 1.38816 * 119.99955 * 359.97229 * 9 8 7 12 12 N 1.31614 * 120.00062 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99717 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47580 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.47038 * 120.00304 * 13 11 9 16 16 H 1.48498 * 109.47218 * 240.00183 * 13 11 9 17 17 C 1.47523 * 108.71559 * 358.93837 * 8 7 6 18 18 H 1.09009 * 109.46929 * 299.99566 * 1 2 3 19 19 H 1.09001 * 109.47488 * 59.99187 * 1 2 3 20 20 H 1.08999 * 109.47525 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46908 * 240.00483 * 2 1 3 22 22 H 1.08995 * 109.47400 * 120.00108 * 2 1 3 23 23 H 1.08999 * 109.46884 * 60.00468 * 3 2 1 24 24 H 1.08995 * 109.47121 * 300.00279 * 3 2 1 25 25 H 1.08996 * 110.72495 * 271.98095 * 6 4 3 26 26 H 1.09006 * 110.72015 * 35.08119 * 6 4 3 27 27 H 1.08998 * 109.87833 * 97.22798 * 7 6 4 28 28 H 1.08997 * 109.88366 * 218.39206 * 7 6 4 29 29 H 0.97002 * 120.00021 * 180.02562 * 12 11 9 30 30 H 1.09001 * 110.37251 * 265.30968 * 17 8 7 31 31 H 1.09004 * 110.41044 * 142.95250 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9582 0.8484 -0.8279 6 6 4.1260 2.8903 -0.0467 7 6 5.5081 2.7512 0.6259 8 7 5.4686 1.5398 1.4581 9 6 6.5063 1.0515 2.2064 10 1 6.3761 0.1500 2.7867 11 6 7.7254 1.7152 2.2191 12 7 7.8839 2.8140 1.5122 13 14 9.1406 1.0494 3.2404 14 1 8.7085 -0.1883 3.9378 15 1 10.2900 0.7408 2.3521 16 1 9.5488 2.0661 4.2429 17 6 4.1258 0.9378 1.3543 18 1 -0.3633 0.5138 0.8901 19 1 -0.3634 0.5140 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 1.8932 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8899 23 1 1.6766 1.9563 0.8900 24 1 1.6765 1.9564 -0.8899 25 1 4.2310 3.2306 -1.0768 26 1 3.4856 3.5676 0.5184 27 1 6.2824 2.6533 -0.1349 28 1 5.7063 3.6230 1.2495 29 1 8.7359 3.2776 1.5208 30 1 3.4931 1.2778 2.1742 31 1 4.1959 -0.1500 1.3540 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133083705.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:25 Heat of formation + Delta-G solvation = -18.589166 kcal Electronic energy + Delta-G solvation = -11335.171556 eV Core-core repulsion = 9422.553692 eV Total energy + Delta-G solvation = -1912.617863 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.45057 -35.99914 -34.03489 -31.43777 -29.80581 -27.25920 -25.46000 -22.62021 -21.63203 -20.86491 -18.83758 -16.95025 -16.51817 -15.67857 -15.63977 -14.39063 -14.30468 -13.89287 -13.82349 -13.46037 -12.98675 -12.86673 -12.58023 -12.49492 -12.14135 -11.97495 -11.83345 -11.56824 -11.35921 -11.15453 -11.07477 -10.72964 -8.90401 -7.86240 -5.22111 1.43865 1.45767 1.56298 2.48767 3.31594 3.66911 3.89592 4.01979 4.13902 4.36096 4.44534 4.50757 4.69859 4.79211 4.87567 4.97157 5.03736 5.06517 5.12461 5.24293 5.31267 5.42533 5.48041 5.52444 5.60978 5.69000 5.77552 6.19473 7.09508 7.77604 8.43237 9.24825 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.076573 B = 0.009465 C = 0.008604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.575534 B = 2957.683833 C = 3253.645448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.096 4.096 4 C -0.090 4.090 5 H 0.068 0.932 6 C -0.128 4.128 7 C 0.183 3.817 8 N -0.633 5.633 9 C -0.245 4.245 10 H 0.082 0.918 11 C -0.071 4.071 12 N -0.955 5.955 13 Si 0.982 3.018 14 H -0.264 1.264 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.136 3.864 18 H 0.053 0.947 19 H 0.060 0.940 20 H 0.059 0.941 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.007 0.993 28 H 0.002 0.998 29 H 0.247 0.753 30 H 0.021 0.979 31 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.175 -3.470 -3.497 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.134 4.134 4 C -0.110 4.110 5 H 0.087 0.913 6 C -0.166 4.166 7 C 0.057 3.943 8 N -0.360 5.360 9 C -0.374 4.374 10 H 0.100 0.900 11 C -0.264 4.264 12 N -0.604 5.604 13 Si 0.810 3.190 14 H -0.189 1.189 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.012 3.988 18 H 0.073 0.927 19 H 0.079 0.921 20 H 0.078 0.922 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.026 0.974 28 H 0.020 0.980 29 H 0.056 0.944 30 H 0.039 0.961 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.986 -3.439 -3.440 12.935 hybrid contribution 1.277 -0.021 0.587 1.405 sum -10.710 -3.459 -2.853 11.610 Atomic orbital electron populations 1.21742 0.94630 1.01976 1.02078 1.21537 0.96689 0.96318 1.01761 1.21485 0.91924 0.97538 1.02429 1.22302 0.96263 0.95729 0.96676 0.91319 1.22798 0.96062 0.97101 1.00656 1.20912 0.93405 0.88024 0.91911 1.44929 1.09337 1.27816 1.53892 1.19564 0.90543 1.06978 1.20284 0.90009 1.25731 1.00588 0.98106 1.01947 1.70224 1.24274 1.20130 1.45788 0.84954 0.78740 0.77681 0.77636 1.18868 1.21715 1.21756 1.21810 0.85366 0.95979 0.95686 0.92747 0.92055 0.92220 0.92024 0.92924 0.92050 0.90492 0.90326 0.91172 0.97431 0.97981 0.94407 0.96134 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.91 71.98 0.71 -1.97 16 2 C -0.13 -2.89 5.81 30.59 0.18 -2.71 16 3 C -0.10 -2.48 4.72 30.60 0.14 -2.34 16 4 C -0.09 -3.15 3.04 -9.40 -0.03 -3.17 16 5 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 6 C -0.13 -4.90 6.42 31.79 0.20 -4.69 16 7 C 0.18 9.61 5.37 86.73 0.47 10.07 16 8 N -0.63 -34.70 3.40 -691.72 -2.35 -37.04 16 9 C -0.24 -14.46 10.28 84.03 0.86 -13.59 16 10 H 0.08 4.61 7.83 -2.91 -0.02 4.58 16 11 C -0.07 -4.24 5.49 84.86 0.47 -3.77 16 12 N -0.95 -60.05 10.31 21.65 0.22 -59.83 16 13 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 14 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 16 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 17 C 0.14 5.85 6.04 86.84 0.52 6.38 16 18 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 19 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 20 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 22 H 0.05 1.33 7.59 -2.39 -0.02 1.31 16 23 H 0.06 1.60 8.04 -2.39 -0.02 1.58 16 24 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.07 2.48 8.04 -2.38 -0.02 2.46 16 27 H 0.01 0.44 7.38 -2.39 -0.02 0.42 16 28 H 0.00 0.11 7.50 -2.39 -0.02 0.10 16 29 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 30 H 0.02 0.88 7.96 -2.39 -0.02 0.86 16 31 H 0.04 1.57 8.10 -2.38 -0.02 1.55 16 Total: -1.00 -67.35 249.41 4.49 -62.85 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: 1.06 Total: 0.49 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: 3.53 Total: -15.80 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -2.13 Total: -96.87 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -67.35 4.49 -62.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133083705.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.265 kcal (2) G-P(sol) polarization free energy of solvation -67.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds