Wall clock time and date at job start Mon Mar 30 2020 01:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99884 * 2 1 4 4 H 1.48494 * 109.47447 * 240.00110 * 3 2 1 5 5 H 1.48502 * 109.47350 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46998 * 119.99993 * 3 2 1 7 7 C 1.37877 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99878 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47340 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47398 * 180.02562 * 10 9 7 12 12 C 1.53120 * 109.52343 * 184.99571 * 11 10 9 13 13 C 1.53042 * 109.27821 * 182.43872 * 12 11 10 14 14 N 1.46848 * 109.52160 * 59.18425 * 13 12 11 15 15 C 1.46847 * 111.19556 * 298.25623 * 14 13 12 16 16 C 1.53034 * 109.52616 * 61.74332 * 15 14 13 17 17 H 0.97000 * 120.00547 * 359.97438 * 1 2 3 18 18 H 1.08993 * 109.47231 * 59.99888 * 9 7 2 19 19 H 1.08998 * 109.47169 * 299.99853 * 9 7 2 20 20 H 1.09003 * 109.47427 * 59.99464 * 10 9 7 21 21 H 1.09008 * 109.46614 * 299.99864 * 10 9 7 22 22 H 1.08996 * 109.57542 * 305.15898 * 11 10 9 23 23 H 1.08997 * 109.49895 * 62.50324 * 12 11 10 24 24 H 1.08998 * 109.50437 * 302.38327 * 12 11 10 25 25 H 1.08995 * 109.46577 * 299.16647 * 13 12 11 26 26 H 1.08994 * 109.45929 * 179.19867 * 13 12 11 27 27 H 1.00901 * 111.00066 * 62.35005 * 14 13 12 28 28 H 1.09000 * 109.46087 * 181.75730 * 15 14 13 29 29 H 1.09004 * 109.46240 * 301.72671 * 15 14 13 30 30 H 1.08998 * 109.50577 * 180.88107 * 16 15 14 31 31 H 1.09000 * 109.50061 * 60.76065 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 6 2.4696 -6.1490 0.1245 13 6 1.7044 -7.4730 0.0621 14 7 0.9782 -7.5605 -1.2113 15 6 -0.0109 -6.4820 -1.3336 16 6 0.7030 -5.1285 -1.3128 17 1 -0.4851 0.8400 0.0004 18 1 0.6241 -2.5567 -0.8902 19 1 0.6248 -2.5571 0.8897 20 1 2.8721 -3.6043 0.8894 21 1 2.8719 -3.6042 -0.8906 22 1 0.7854 -5.0079 0.8382 23 1 2.9959 -6.0775 1.0763 24 1 3.1884 -6.1052 -0.6937 25 1 0.9956 -7.5221 0.8886 26 1 2.4074 -8.3025 0.1370 27 1 1.6166 -7.5560 -1.9927 28 1 -0.5537 -6.5918 -2.2724 29 1 -0.7117 -6.5358 -0.5005 30 1 -0.0327 -4.3278 -1.3878 31 1 1.3940 -5.0686 -2.1536 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145039471.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:22 Heat of formation + Delta-G solvation = -54.690507 kcal Electronic energy + Delta-G solvation = -11219.834239 eV Core-core repulsion = 9305.650904 eV Total energy + Delta-G solvation = -1914.183335 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.94265 -36.06105 -34.22655 -31.76826 -30.80990 -27.06402 -24.37251 -23.63383 -21.93319 -20.96135 -18.51809 -16.89576 -16.54138 -15.65154 -15.52795 -15.20760 -14.70649 -14.51131 -13.88523 -13.41512 -13.15902 -13.01723 -12.71775 -12.49162 -12.16223 -12.09167 -11.83232 -11.67249 -11.32107 -11.09340 -10.89177 -10.55145 -9.26791 -8.22211 -6.34002 1.36796 1.40098 1.48217 2.38456 3.10020 3.44046 3.79737 3.91423 4.13766 4.25311 4.45713 4.48668 4.57872 4.76407 4.85061 4.91281 5.02930 5.04193 5.10351 5.16722 5.24876 5.37648 5.43095 5.53938 5.76512 5.84096 6.09252 6.23928 6.52757 6.83346 7.35185 8.89153 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.086465 B = 0.008208 C = 0.007776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.754598 B = 3410.395223 C = 3599.751484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.094 4.094 11 C -0.084 4.084 12 C -0.144 4.144 13 C 0.060 3.940 14 N -0.686 5.686 15 C 0.063 3.937 16 C -0.147 4.147 17 H 0.264 0.736 18 H -0.003 1.003 19 H -0.017 1.017 20 H 0.045 0.955 21 H 0.045 0.955 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.346 0.654 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.582 -12.177 -1.601 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.587 4.587 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.131 4.131 11 C -0.103 4.103 12 C -0.183 4.183 13 C -0.070 4.070 14 N -0.315 5.315 15 C -0.067 4.067 16 C -0.186 4.186 17 H 0.073 0.927 18 H 0.015 0.985 19 H 0.002 0.998 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.164 0.836 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.967 -12.552 -1.366 12.970 hybrid contribution 0.657 2.104 -0.060 2.204 sum 3.624 -10.449 -1.426 11.151 Atomic orbital electron populations 1.70088 1.07797 1.27851 1.51554 1.26001 0.95806 1.03396 0.94659 0.85508 0.78326 0.78076 0.79197 1.19141 1.20599 1.19186 1.21730 0.93466 0.92747 1.50766 0.92506 1.19004 0.94394 0.92986 0.94585 1.21502 0.97752 0.94011 0.99870 1.21162 0.97128 0.94574 0.97408 1.22269 0.98018 0.95449 1.02557 1.22045 0.96860 0.95767 0.92291 1.60752 1.19671 1.45900 1.05131 1.21968 0.94730 0.87381 1.02572 1.22257 0.99742 0.99219 0.97361 0.92734 0.98498 0.99816 0.93607 0.93594 0.93014 0.91220 0.91782 0.91463 0.88854 0.83635 0.89744 0.91577 0.93490 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.96 45.08 29.54 68.60 2.03 47.10 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.55 -32.35 9.11 25.60 0.23 -32.11 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.03 1.49 4.74 29.85 0.14 1.63 16 10 C -0.09 -4.00 4.62 30.59 0.14 -3.85 16 11 C -0.08 -2.89 2.25 -10.71 -0.02 -2.92 16 12 C -0.14 -3.78 5.36 30.65 0.16 -3.62 16 13 C 0.06 1.34 6.55 86.33 0.57 1.90 16 14 N -0.69 -15.86 6.87 -514.01 -3.53 -19.39 16 15 C 0.06 1.66 6.55 86.32 0.57 2.22 16 16 C -0.15 -4.78 5.06 30.65 0.16 -4.62 16 17 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 18 H 0.00 -0.19 6.64 -2.39 -0.02 -0.21 16 19 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 20 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 21 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 22 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.35 7.10 8.86 -89.69 -0.79 6.30 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.05 1.80 6.70 -2.39 -0.02 1.78 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -64.44 248.54 1.47 -62.97 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.29 Total: 7.98 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 2.40 Total: -40.96 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -3.24 Total: -77.10 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -64.44 1.47 -62.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145039471.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.278 kcal (2) G-P(sol) polarization free energy of solvation -64.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds