Wall clock time and date at job start Mon Mar 30 2020 02:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.47444 * 110.99723 * 179.87585 * 12 2 1 14 14 C 1.54324 * 107.22863 * 123.25791 * 13 12 2 15 15 C 1.55134 * 103.01939 * 22.28400 * 14 13 12 16 16 C 1.47846 * 110.99684 * 300.71710 * 12 2 1 17 17 H 1.08988 * 110.37938 * 332.46599 * 16 12 2 18 18 C 1.53005 * 110.36980 * 94.81003 * 16 12 2 19 19 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 23 23 H 1.08997 * 109.88808 * 242.66106 * 13 12 2 24 24 H 1.08993 * 109.89221 * 3.85304 * 13 12 2 25 25 H 1.09007 * 110.70529 * 140.66700 * 14 13 12 26 26 H 1.08996 * 110.70813 * 263.72362 * 14 13 12 27 27 H 1.09004 * 110.99128 * 82.44105 * 15 14 13 28 28 H 1.09006 * 110.98618 * 206.24930 * 15 14 13 29 29 H 1.08999 * 109.47230 * 59.99589 * 18 16 12 30 30 H 1.09005 * 109.46661 * 179.97438 * 18 16 12 31 31 H 1.08999 * 109.46854 * 299.99455 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 3.4936 -0.7147 1.2320 14 6 3.9315 -0.0571 2.5577 15 6 2.6766 -0.2128 3.4563 16 6 1.5315 -0.0319 2.4289 17 1 1.3508 1.0269 2.2446 18 6 0.2553 -0.7124 2.9282 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 0.7088 1.1611 -3.4845 23 1 3.8498 -1.7440 1.1933 24 1 3.8917 -0.1502 0.3889 25 1 4.7818 -0.5863 2.9880 26 1 4.1714 0.9952 2.4052 27 1 2.6415 -1.2034 3.9098 28 1 2.6435 0.5654 4.2189 29 1 0.4636 -1.7599 3.1464 30 1 -0.0911 -0.2148 3.8341 31 1 -0.5153 -0.6475 2.1602 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216249752.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:44 Heat of formation + Delta-G solvation = -3.896304 kcal Electronic energy + Delta-G solvation = -11753.639471 eV Core-core repulsion = 9841.658738 eV Total energy + Delta-G solvation = -1911.980733 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.45029 -33.73040 -31.20705 -30.74673 -27.47559 -25.02068 -24.93672 -20.78128 -20.31311 -18.92007 -16.05093 -15.44442 -14.87746 -14.14878 -13.39977 -13.17505 -12.44467 -12.31767 -12.02447 -11.54293 -11.30438 -10.93449 -10.80431 -10.57828 -10.51204 -10.27171 -10.16811 -9.94148 -9.79560 -9.60574 -8.83175 -8.36707 -7.08815 -5.96364 -4.00690 3.34708 3.38667 3.42058 4.44574 4.99482 5.26450 5.30905 5.34187 5.62415 5.90980 6.00996 6.13292 6.16262 6.23503 6.37674 6.46303 6.65327 6.79910 6.84900 6.85588 6.92579 7.13358 7.17994 7.58582 7.79533 7.89882 8.27025 8.41951 8.66802 9.06571 9.64107 11.10095 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.054896 B = 0.013034 C = 0.011402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.934578 B = 2147.754358 C = 2455.166982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.209 3.791 3 H -0.004 1.004 4 C -0.501 4.501 5 H 0.060 0.940 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.277 1.277 12 N -0.522 5.522 13 C 0.054 3.946 14 C -0.144 4.144 15 C -0.124 4.124 16 C 0.067 3.933 17 H 0.043 0.957 18 C -0.138 4.138 19 H 0.033 0.967 20 H 0.013 0.987 21 H 0.082 0.918 22 H 0.260 0.740 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.047 -1.046 8.256 8.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.102 3.898 3 H 0.014 0.986 4 C -0.540 4.540 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.214 1.214 10 H -0.204 1.204 11 H -0.203 1.203 12 N -0.248 5.248 13 C -0.074 4.074 14 C -0.183 4.183 15 C -0.162 4.162 16 C -0.041 4.041 17 H 0.061 0.939 18 C -0.196 4.196 19 H 0.053 0.947 20 H 0.032 0.968 21 H 0.101 0.899 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.767 -1.434 8.063 8.378 hybrid contribution 0.609 0.429 -0.905 1.172 sum 2.376 -1.004 7.158 7.609 Atomic orbital electron populations 1.21940 0.97880 0.99501 0.99924 1.19400 0.92388 0.91732 0.86255 0.98612 1.21119 1.30817 1.12188 0.89835 0.92137 1.24937 0.95294 0.95110 0.98978 1.69890 1.37027 1.23106 1.23403 0.86591 0.79057 0.79783 0.82140 1.21409 1.20385 1.20251 1.63610 1.06522 1.52550 1.02101 1.22585 0.89614 0.99659 0.95528 1.22828 0.97597 1.00531 0.97338 1.22738 0.95136 1.01127 0.97225 1.22442 0.94477 0.96331 0.90881 0.93875 1.21904 0.97701 1.00149 0.99847 0.94747 0.96819 0.89932 0.93010 0.92249 0.91953 0.91942 0.92255 0.91328 0.92185 0.92821 0.93982 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 7.72 37.16 0.29 -3.08 16 2 C 0.21 5.43 1.65 -68.87 -0.11 5.32 16 3 H 0.00 -0.10 8.10 -51.92 -0.42 -0.53 16 4 C -0.50 -14.06 7.69 -34.44 -0.26 -14.33 16 5 H 0.06 1.70 7.43 -52.49 -0.39 1.31 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.96 11.32 55.43 0.63 -25.33 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 N -0.52 -11.71 4.70 -216.85 -1.02 -12.73 16 13 C 0.05 1.11 6.05 -2.83 -0.02 1.09 16 14 C -0.14 -2.37 6.94 -24.91 -0.17 -2.54 16 15 C -0.12 -1.97 6.49 -24.60 -0.16 -2.13 16 16 C 0.07 1.28 2.42 -66.18 -0.16 1.12 16 17 H 0.04 0.88 7.58 -51.94 -0.39 0.48 16 18 C -0.14 -2.37 9.16 37.16 0.34 -2.03 16 19 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 20 H 0.01 0.30 5.58 -51.93 -0.29 0.01 16 21 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.06 1.40 7.04 -51.93 -0.37 1.03 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.03 8.05 -51.93 -0.42 0.62 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.90 8.13 -51.93 -0.42 0.47 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.25 5.26 -51.93 -0.27 0.98 16 LS Contribution 240.59 15.07 3.63 3.63 Total: -1.00 -28.77 240.59 -7.10 -35.87 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -4.95 Total: -3.06 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -0.36 Total: -15.05 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: -0.39 Total: -38.06 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.77 -7.10 -35.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216249752.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.970 kcal (2) G-P(sol) polarization free energy of solvation -28.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds